DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011645
GeneLin54
Synonyms
Desc.lin-54 homolog (C. elegans)
LocusNM_001115010 chr5:100871058-100927592(-)
NM_172714 chr5:100871058-100929658(-)
DB links


Entrez 231506
MGI 2140902
Ensembl ENSMUSG00000035310
Vega OTTMUSG00000033912
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011585
(v2.0)
Lin54NM_001115010,NM_172714231506
3.632929.977756.606754.561426.97164.970110.193451.948925.7625.18206
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011645
(v1.0)
Lin54231506
Major ZGA0.95284
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011585
(v2.0)
Lin54231506
552/3310.2244398/3310.1493115/3312.0364384/3311.538421/331-1.8715271/331-0.8842
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011585
(v2.0)
Lin54231506
297/1400.5689191/1400.329897/1402.9666343/1402.60264/140-2.791835/140-2.5485
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011585
(v2.0)
Lin54231506
43.10913432.17
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011585
(v2.0)
Lin54231506
8.6678010.83
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
31.158138.964240.588418.68427.21168
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
168.206178.536151.93752.269133.1959
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
32.57861.3285942.5108
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
31.838.57338.3933
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
184.724199.13
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
32.59761.3103942.1084
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
37.578618.040417.8151
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
52.640745.7487
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
21.909630.7917
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011645
(v1.0)
Lin54NM_001115010,NM_172714231506
3.444274.59542
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011645
(v1.0)
1435181_atMm.212568Lin54NM_001115010.1,NM_172714.4231506
325.9572.5775.50303.175
0011645
(v1.0)
1458582_atMm.212568Lin54NM_001115010.1,NM_172714.4231506
00146.0750185.15
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011645
(v1.0)
A_52_P606924AI461788NM_172714231506
11P1.3570.201P
Proteome N/A