DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011648
GeneLin7c
SynonymsD2Ertd520e
LIN-7-C
LIN-7C
Lin7c
MALS-3
Veli3
Desc.lin-7 homolog C (C. elegans)
LocusNM_011699 chr2:109731035-109741093(+)
DB links


Entrez 22343
MGI 1330839
Ensembl ENSMUSG00000027162
Vega OTTMUSG00000015123
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011588
(v2.0)
Lin7cNM_01169922343
15.569112.525319.95726.347440.825940.310615.347115.165731.43839.2925
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011648
(v1.0)
Lin7c22343
MGA0.9587
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011588
(v2.0)
Lin7c22343
683/4220.1814489/4220.0962148/4222.0582371/4221.1408102/4220.009531/422-0.2672
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011588
(v2.0)
Lin7c22343
343/1890.3454251/1890.2917147/1893.1585344/1892.180419/189-1.21493/189-1.6067
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011588
(v2.0)
Lin7c22343
44.599411140.18
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011588
(v2.0)
Lin7c22343
9.94957413.45
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011648
(v1.0)
Lin7cNM_01169922343
13.011913.764119.619228.358110.7304
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011648
(v1.0)
Lin7cFR037526,FR165424,FR378413,NM_01169922343
27.950126.822835.404453.798418.8418
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011648
(v1.0)
Lin7cNM_01169922343
13.60525.6937715.0169
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011648
(v1.0)
Lin7cNM_01169922343
13.2813.625911.2283
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011648
(v1.0)
Lin7cFR037526,FR165424,FR378413,NM_01169922343
15.369813.1657
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011648
(v1.0)
Lin7cNM_01169922343
13.61315.6157812.3148
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011648
(v1.0)
Lin7cNM_01169922343
18.164327.380821.7425
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011648
(v1.0)
Lin7cFR037526,FR165424,FR378413,NM_01169922343
38.533127.6851
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011648
(v1.0)
Lin7cNM_01169922343
179.21756.7033
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011648
(v1.0)
Lin7cNM_01169922343
13.734417.5929
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011648
(v1.0)
7618H3050G09-3Mm.235300Lin7c22343
U002220NAP092845-001AU019331;TC910107Q99KF6U,F,23.84614.02623.59983.66133.44853.34143.3086
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011648
(v1.0)
1418898_atMm.478053Lin7cNM_011699.322343
251.6576.35485.875194.225111.4
0011648
(v1.0)
1423322_atMm.478053Lin7cNM_011699.322343
93.025149.798.325328.725252.775
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011648
(v1.0)
A_51_P145433Lin7cNM_01169922343
11P0.810.281P
0011648
(v1.0)
A_51_P334118Lin7cNM_01169922343
11P1.020.874P
0011648
(v1.0)
A_52_P124279Lin7cNM_01169922343
11P0.6550.149P
Proteome N/A