DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011745
GeneLrch4
SynonymsLRN
LRRN4
SAP25
Desc.leucine-rich repeats and calponin homology (CH) domain containing 4
LocusNM_001168652 chr5:138070351-138082327(+)
NM_146164 chr5:138070351-138082327(+)
DB links


Entrez 231798
MGI 1917193
Ensembl ENSMUSG00000029720
Ensembl ENSMUSG00000093445
Vega OTTMUSG00000040073
Vega OTTMUSG00000040080
Featureprotein-coding
GO(BP)
  •   1 Terms
      negative regulation of transcription, DNA-dependent (GO:0045892)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011689
(v2.0)
Lrch4NM_001168652,NR_033148231798
30.836639.428549.166611.42425.8309417.28465.6028893.35816.4782817.2243
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011745
(v1.0)
Lrch4Maternal RNA0.94766
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011689
(v2.0)
Lrch4231798
932/5420.2688567/542-0.0511570/5425.10443883/5424.165842/542-1.6091306/542-1.4196
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011689
(v2.0)
Lrch4231798
412/2290.3332275/2290.1473918/2295.53132195/2294.57713/229-2.000165/229-2.3892
SPR_Methy_Kobayashi_+-5KfromTSS N/A
SPR_Methy_Kobayashi_+-2KfromTSS N/A
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011745
(v1.0)
Lrch4NM_001081962,NM_001168652,NM_146164231798
47.388239.984510.39495.503475.6652
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011745
(v1.0)
Lrch4NM_001168652,NR_033148231798
860.005719.052209.182131.627116.251
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011745
(v1.0)
Lrch4NM_001081962,NM_001168652,NM_146164231798
49.548715.442843.624
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011745
(v1.0)
Lrch4NM_001081962,NM_001168652,NM_146164231798
48.364439.58379.6827
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011745
(v1.0)
Lrch4NM_001168652,NR_033148231798
274.457498.997
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011745
(v1.0)
Lrch4NM_001081962,NM_001168652,NM_146164231798
49.577515.231387.3933
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011745
(v1.0)
Lrch4NM_001081962,NM_001168652,NM_146164231798
9.62415.313825.71045
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011745
(v1.0)
Lrch4NM_001168652,NR_033148231798
27.355642.438
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011745
(v1.0)
Lrch4NM_001081962,NM_001168652,NM_146164231798
46.812334.4581
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011745
(v1.0)
Lrch4NM_001168652,NM_146164231798
16.74999.76978
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011745
(v1.0)
2541C0335G07-3Mm.2007632810008P14Rik231798
2810008P14RikTC921165,TC9211643.14073.16053.08253.06212.60422.8172.7179
0011745
(v1.0)
21781L0910E09-3Mm.2007632810008P14Rik231798
U042702NAP096885-0012810008P14Rik;TC794326Q921G62.97923.06682.70122.84882.68832.82582.6464
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011745
(v1.0)
A_52_P151278Lrch4NM_146164231798
11P0.5820.237P
0011745
(v1.0)
A_52_P38964Lrch4AK131167231798
11P2.2060.0803P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011745
(v1.0)
Lrch4231798
020020