DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011772
GeneLrp6
SynonymsCd
Desc.low density lipoprotein receptor-related protein 6
LocusNM_008514 chr6:134396496-134516931(-)
DB links


Entrez 16974
MGI 1298218
Ensembl ENSMUSG00000030201
Vega OTTMUSG00000021240
Featureprotein-coding
GO(BP)
  •   91 Terms
      gastrulation with mouth forming second (GO:0001702)
      somitogenesis (GO:0001756)
      neural tube closure (GO:0001843)
      negative regulation of protein phosphorylation (GO:0001933)
      heart looping (GO:0001947)
      morphogenesis of an epithelium (GO:0002009)
      positive regulation of mesenchymal cell proliferation (GO:0002053)
      pericardium morphogenesis (GO:0003344)
      axis elongation (GO:0003401)
      regulation of transcription, DNA-dependent (GO:0006355)
      negative regulation of protein kinase activity (GO:0006469)
      endocytosis (GO:0006897)
      elevation of cytosolic calcium ion concentration (GO:0007204)
      synaptic transmission (GO:0007268)
      multicellular organismal development (GO:0007275)
      embryonic pattern specification (GO:0009880)
      dorsal/ventral axis specification (GO:0009950)
      anterior/posterior pattern specification (GO:0009952)
      neural crest formation (GO:0014029)
      neural crest cell differentiation (GO:0014033)
      Wnt receptor signaling pathway (GO:0016055)
      cell-cell adhesion (GO:0016337)
      cerebellum morphogenesis (GO:0021587)
      thalamus development (GO:0021794)
      cerebral cortex cell migration (GO:0021795)
      forebrain radial glial cell differentiation (GO:0021861)
      forebrain generation of neurons (GO:0021872)
      Wnt receptor signaling pathway involved in forebrain neuroblast division (GO:0021874)
      neural tube development (GO:0021915)
      formation of radial glial scaffolds (GO:0021943)
      cerebral cortex development (GO:0021987)
      negative regulation of Wnt receptor signaling pathway (GO:0030178)
      embryonic limb morphogenesis (GO:0030326)
      forebrain development (GO:0030900)
      midbrain development (GO:0030901)
      midbrain-hindbrain boundary development (GO:0030917)
      negative regulation of smooth muscle cell apoptotic process (GO:0034392)
      limb morphogenesis (GO:0035108)
      embryonic forelimb morphogenesis (GO:0035115)
      embryonic hindlimb morphogenesis (GO:0035116)
      external genitalia morphogenesis (GO:0035261)
      post-anal tail morphogenesis (GO:0036342)
      cell migration involved in gastrulation (GO:0042074)
      regulation of cell proliferation (GO:0042127)
      odontogenesis of dentin-containing tooth (GO:0042475)
      embryonic digit morphogenesis (GO:0042733)
      positive regulation of apoptotic process (GO:0043065)
      Wnt receptor signaling pathway involved in dorsal/ventral axis specification (GO:0044332)
      negative regulation of fat cell differentiation (GO:0045599)
      positive regulation of ossification (GO:0045778)
      positive regulation of bone resorption (GO:0045780)
      positive regulation of cell cycle (GO:0045787)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      bone remodeling (GO:0046849)
      embryonic camera-type eye morphogenesis (GO:0048596)
      generation of neurons (GO:0048699)
      skeletal system morphogenesis (GO:0048705)
      negative regulation of epithelial cell proliferation (GO:0050680)
      positive regulation of sequence-specific DNA binding transcription factor activity (GO:0051091)
      response to folic acid (GO:0051593)
      palate development (GO:0060021)
      convergent extension (GO:0060026)
      retina morphogenesis in camera-type eye (GO:0060042)
      embryonic retina morphogenesis in camera-type eye (GO:0060059)
      canonical Wnt receptor signaling pathway (GO:0060070)
      regulation of cell development (GO:0060284)
      face morphogenesis (GO:0060325)
      bone morphogenesis (GO:0060349)
      branching involved in mammary gland duct morphogenesis (GO:0060444)
      trachea cartilage morphogenesis (GO:0060535)
      mammary placode formation (GO:0060596)
      mammary gland duct morphogenesis (GO:0060603)
      canonical Wnt receptor signaling pathway involved in cardiac neural crest cell differentiation involved in heart development (GO:0061310)
      canonical Wnt receptor signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation (GO:0061324)
      cellular response to cholesterol (GO:0071397)
      dopaminergic neuron differentiation (GO:0071542)
      negative regulation of protein serine/threonine kinase activity (GO:0071901)
      primitive streak formation (GO:0090009)
      receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport (GO:0090118)
      Wnt receptor signaling pathway involved in somitogenesis (GO:0090244)
      axis elongation involved in somitogenesis (GO:0090245)
      positive regulation of canonical Wnt receptor signaling pathway (GO:0090263)
      negative regulation of non-canonical Wnt receptor signaling pathway (GO:2000051)
      positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification (GO:2000055)
      negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis (GO:2000149)
      negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis (GO:2000151)
      negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis (GO:2000162)
      negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis (GO:2000164)
      negative regulation of planar cell polarity pathway involved in pericardium morphogenesis (GO:2000166)
      negative regulation of planar cell polarity pathway involved in neural tube closure (GO:2000168)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011716
(v2.0)
Lrp6NM_00851416974
8.3048459.836589.622554.076929.22245.2636317.063385.952528.00724.70685
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011772
(v1.0)
Lrp616974
Minor ZGA0.88313
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011716
(v2.0)
Lrp616974
661/3900.2478434/3900.0379120/3901.8684256/3900.7203103/3900.1356747/3900.3375
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011716
(v2.0)
Lrp616974
355/1550.6792210/1550.3201116/1553.0866221/1551.826340/1550.101264/1550.1679
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011716
(v2.0)
Lrp616974
44.120510641.62
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011716
(v2.0)
Lrp616974
12.64656818.6
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011772
(v1.0)
Lrp6NM_00851416974
62.200261.936440.201420.222511.9745
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011772
(v1.0)
Lrp6FR236623,FR330909,NM_00851416974
192.957183.293122.07850.308129.4052
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011772
(v1.0)
Lrp6NM_00851416974
65.03613.0371667.574
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011772
(v1.0)
Lrp6NM_00851416974
63.481661.314563.6632
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011772
(v1.0)
Lrp6FR236623,FR330909,NM_00851416974
230.283266.11
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011772
(v1.0)
Lrp6NM_00851416974
65.07382.9955769.8237
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011772
(v1.0)
Lrp6NM_00851416974
37.220219.525619.3818
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011772
(v1.0)
Lrp6FR236623,FR330909,NM_00851416974
58.148660.4108
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011772
(v1.0)
Lrp6NM_00851416974
79.400623.0529
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011772
(v1.0)
Lrp6NM_00851416974
8.8778415.4931
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011772
(v1.0)
17096K0533E08-3Mm.20861C030016K15Rik77387
U027954NAP018583-001Lrp6;TC904772O885722.79212.58132.53322.87152.65862.70022.6437
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011772
(v1.0)
A_51_P169401Lrp6NM_00851416974
11P0.8390.337P
Proteome N/A