DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011807
GeneLrrc40
Synonyms
Desc.leucine rich repeat containing 40
LocusNM_024194 chr3:157699667-157731442(+)
DB links


Entrez 67144
MGI 1914394
Ensembl ENSMUSG00000063052
Vega OTTMUSG00000031933
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011750
(v2.0)
Lrrc40NM_001289524,NM_001289525,NM_02419467144
4.7514468.7821159.27266.977725.736626.718321.6579125.44932.32326.35
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011807
(v1.0)
Lrrc4067144
Minor ZGA0.91248
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011750
(v2.0)
Lrrc4067144
833/3550.7161691/3550.84291152/3555.25214460/3554.972615/355-2.4307147/355-1.8606
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011750
(v2.0)
Lrrc4067144
376/1450.8574349/1451.1455697/1455.75232451/1455.38639/145-1.84164/145-1.7554
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011750
(v2.0)
Lrrc4067144
37.496511034.09
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011750
(v2.0)
Lrrc4067144
14.1166521.72
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011807
(v1.0)
Lrrc40NM_02419467144
47.431472.379632.646411.58810.3422
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011807
(v1.0)
Lrrc40NM_02419467144
270.281385.931155.13467.8802116.428
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011807
(v1.0)
Lrrc40NM_02419467144
49.59381.0784978.9678
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011807
(v1.0)
Lrrc40NM_02419467144
48.408571.652961.108
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011807
(v1.0)
Lrrc40NM_02419467144
1637.3731.819
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011807
(v1.0)
Lrrc40NM_02419467144
49.62271.0637167.0212
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011807
(v1.0)
Lrrc40NM_02419467144
30.225511.188714.3971
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011807
(v1.0)
Lrrc40NM_02419467144
62.446278.4288
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011807
(v1.0)
Lrrc40NM_02419467144
110.97828.0927
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011807
(v1.0)
Lrrc40NM_02419467144
29.879237.0699
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011807
(v1.0)
4842G0109D01-3Mm.247372610040E16Rik67144
U004027NAP121755-0012610040E16Rik;TC858936Q9CRC8U,F,24.12284.27844.47574.10313.5273.9553.6414
0011807
(v1.0)
21537L0858F07-3Mm.247372610040E16Rik67144
U024797NAP121766-001TC849464U,F,22.94042.98423.16653.05492.70883.03042.7858
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011807
(v1.0)
1448720_atMm.358704Lrrc40NM_024194.567144
1054.62024.41815.025215.375435.5
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011807
(v1.0)
A_51_P345139Lrrc40NM_02419467144
11P1.1160.469P
0011807
(v1.0)
A_52_P246081Lrrc40NM_02419467144
11P0.6750.161P
0011807
(v1.0)
A_52_P48446Lrrc40NM_02419467144
11P0.8350.325P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011807
(v1.0)
Lrrc4067144
010010