DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011809
GeneLrrc42
Synonyms
Desc.leucine rich repeat containing 42
LocusNM_029985 chr4:106906119-106926138(-)
DB links


Entrez 77809
MGI 1925059
Ensembl ENSMUSG00000028617
Vega OTTMUSG00000008593
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011752
(v2.0)
Lrrc42NM_02998577809
7.64052109.527118.2148.627782.553517.722711.5153121.81576.662818.209
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011809
(v1.0)
Lrrc4277809
Maternal RNA0.92484
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011752
(v2.0)
Lrrc4277809
622/3430.345402/3430.1125105/3431.8568207/3430.599161/343-0.4275298/343-0.7991
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011752
(v2.0)
Lrrc4277809
361/1390.8594178/1390.23997/1392.9761191/1391.771419/139-0.7818117/139-0.8397
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011752
(v2.0)
Lrrc4277809
28.973810727.08
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011752
(v2.0)
Lrrc4277809
8.63748410.28
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011809
(v1.0)
Lrrc42NM_02998577809
113.84382.043736.229757.2118.10257
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011809
(v1.0)
Lrrc42NM_02998577809
342.155239.823121.97201.13526.6284
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011809
(v1.0)
Lrrc42NM_02998577809
119.0332.7942289.5114
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011809
(v1.0)
Lrrc42NM_02998577809
116.18881.219990.3718
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011809
(v1.0)
Lrrc42NM_02998577809
474.921515.193
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011809
(v1.0)
Lrrc42NM_02998577809
119.1022.7559499.1167
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011809
(v1.0)
Lrrc42NM_02998577809
33.543155.239553.1056
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011809
(v1.0)
Lrrc42NM_02998577809
198.966182.924
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011809
(v1.0)
Lrrc42NM_02998577809
31.398824.4198
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011809
(v1.0)
Lrrc42NM_02998577809
82.824755.0447
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011809
(v1.0)
1424049_atMm.29681Lrrc42NM_029985.277809
680.675900.35447.975699.75120.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011809
(v1.0)
A_51_P281582Lrrc42NM_02998577809
11P0.6150.147P
0011809
(v1.0)
A_52_P72718Lrrc42NM_02998577809
11P0.7510.331P
Proteome N/A