DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011813
GeneLrrc47
Synonyms
Desc.leucine rich repeat containing 47
LocusNM_201226 chr4:153385912-153395621(+)
DB links


Entrez 72946
MGI 1920196
Ensembl ENSMUSG00000029028
Vega OTTMUSG00000010507
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011756
(v2.0)
Lrrc47NM_20122672946
15.527593.964688.008943.242841.266412.154814.234793.249937.426213.1732
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011813
(v1.0)
Lrrc4772946
Maternal RNA0.99678
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011756
(v2.0)
Lrrc4772946
839/593-0.0122481/593-0.4174136/5931.458284/5930.268122/593-2.6406195/593-2.1952
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011756
(v2.0)
Lrrc4772946
413/2410.2633231/241-0.1766130/2412.6507259/2411.42584/241-3.557990/241-2.0023
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011756
(v2.0)
Lrrc4772946
107.540916465.57
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011756
(v2.0)
Lrrc4772946
25.96097534.61
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011813
(v1.0)
Lrrc47NM_20122672946
97.701861.233532.164228.528110.0416
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011813
(v1.0)
Lrrc47NM_20122672946
552.654374.764206.682213.64342.51
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011813
(v1.0)
Lrrc47NM_20122672946
102.1565.6785666.8071
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011813
(v1.0)
Lrrc47NM_20122672946
99.714660.618769.2044
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011813
(v1.0)
Lrrc47NM_20122672946
475.188367.308
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011813
(v1.0)
Lrrc47NM_20122672946
102.2165.6007875.901
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011813
(v1.0)
Lrrc47NM_20122672946
29.77927.545125.9212
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011813
(v1.0)
Lrrc47NM_20122672946
202.013189.554
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011813
(v1.0)
Lrrc47NM_20122672946
38.805623.2882
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011813
(v1.0)
Lrrc47NM_20122672946
69.06638.259
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011813
(v1.0)
8011H3058B11-3Mm.298812900010D03Rik72946
U005178NAP121955-001TC825577Q9CUZ0U,F4.09164.12313.66013.94823.58563.78793.6193
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011813
(v1.0)
1428451_atMm.260690Lrrc47NM_201226.172946
2717.9752580.4251336.9251418.8251947.975
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011813
(v1.0)
A_52_P582281Lrrc47NM_20122672946
11P1.0010.994P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011813
(v1.0)
Lrrc4772946
109511159