DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011824
GeneLrrc59
SynonymsC78668
Desc.leucine rich repeat containing 59
LocusNM_133807 chr11:94491138-94506530(+)
DB links


Entrez 98238
MGI 2138133
Ensembl ENSMUSG00000020869
Vega OTTMUSG00000002017
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011767
(v2.0)
Lrrc59NM_13380798238
60.754673.508767.466285.355795.871169.6292103.94392.228973.031984.7529
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011824
(v1.0)
Lrrc5998238
Major ZGA0.9288
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011767
(v2.0)
Lrrc5998238
484/2820.2656269/282-0.1836405/2824.0661984/2823.12297/282-3.102987/282-2.2762
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011767
(v2.0)
Lrrc5998238
266/1330.4841143/133-0.0115358/1334.9077799/1333.89283/133-3.04256/133-1.8196
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011767
(v2.0)
Lrrc5998238
51.087710449.12
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011767
(v2.0)
Lrrc5998238
18.23887026.06
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011824
(v1.0)
Lrrc59NM_13380798238
76.432846.716863.544366.377374.2556
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011824
(v1.0)
Lrrc59NM_13380798238
121.82581.963592.820579.191116.192
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011824
(v1.0)
Lrrc59NM_13380798238
79.917522.218650.9691
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011824
(v1.0)
Lrrc59NM_13380798238
78.007446.247868.3463
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011824
(v1.0)
Lrrc59NM_13380798238
261.676304.295
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011824
(v1.0)
Lrrc59NM_13380798238
79.96421.914374.9599
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011824
(v1.0)
Lrrc59NM_13380798238
58.832164.089950.6392
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011824
(v1.0)
Lrrc59NM_13380798238
106.565100.578
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011824
(v1.0)
Lrrc59NM_13380798238
117.9869.57913
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011824
(v1.0)
Lrrc59NM_13380798238
3.371421.2156
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011824
(v1.0)
6436H3025B06-3Mm.28892AA95974298238
U033287NAP120707-001TC888076Q922Q8U,F,22.95272.81943.06073.23162.782.9942.8975
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011824
(v1.0)
1416234_atMm.172720Lrrc59NM_133807.198238
462.75187.275465.775937.051365.625
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011824
(v1.0)
Lrrc5998238
5926142