DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011834
GeneLrrc8a
SynonymsLrrc8
Desc.leucine rich repeat containing 8A
LocusNM_177725 chr2:30093289-30119310(+)
DB links


Entrez 241296
MGI 2652847
Ensembl ENSMUSG00000007476
Vega OTTMUSG00000016752
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011780
(v2.0)
Lrrc8aNM_177725241296
6.6223142.472135.576630.400512.84133.0668412.125639.687115.37483.16794
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011834
(v1.0)
Lrrc8a241296
Maternal RNA0.9453
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011780
(v2.0)
Lrrc8a241296
651/4400.0522358/440-0.4127352/4403.244815/4402.214112/440-3.0367138/440-2.2597
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011780
(v2.0)
Lrrc8a241296
388/2000.4413201/200-0.1084345/2004.3069789/2003.295110/200-2.156490/200-1.7345
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011780
(v2.0)
Lrrc8a241296
89.035719445.89
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011780
(v2.0)
Lrrc8a241296
16.706111714.28
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011834
(v1.0)
Lrrc8aNM_177725241296
44.166624.712222.63698.929018.60167
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011834
(v1.0)
Lrrc8aNM_177725241296
53.015226.773125.372110.258929.2893
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011834
(v1.0)
Lrrc8aNM_177725241296
46.18022.4218526.9616
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011834
(v1.0)
Lrrc8aNM_177725241296
45.076424.464129.441
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011834
(v1.0)
Lrrc8aNM_177725241296
27.183733.0905
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011834
(v1.0)
Lrrc8aNM_177725241296
46.2072.3886832.2899
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011834
(v1.0)
Lrrc8aNM_177725241296
20.95838.6213110.656
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011834
(v1.0)
Lrrc8aNM_177725241296
10.147812.4783
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011834
(v1.0)
Lrrc8aNM_177725241296
34.999812.4343
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011834
(v1.0)
Lrrc8aNM_177725241296
12.55929.82695
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011834
(v1.0)
1434694_atMm.297949~Mm.389232Phyhd1~Lrrc8aNM_172267.2~NM_177725.4227696
241296
102.275103.57594.458.435.65
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011834
(v1.0)
A_52_P384621Lrrc8NM_177725241296
11P1.3740.194P
Proteome N/A