DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011864
GeneLsm1
Synonyms
Desc.LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LocusNM_026032 chr8:26896063-26914447(+)
DB links


Entrez 67207
MGI 1914457
Ensembl ENSMUSG00000037296
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011810
(v2.0)
Lsm1NM_02603267207
2.542694.930878.342326.088075.010263.926858.366829.42085.383724.19433
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011864
(v1.0)
Lsm167207
Minor ZGA0.92978
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011810
(v2.0)
Lsm167207
668/3610.3741483/3610.3031230/3612.9093480/3611.735313/361-2.6473122/361-2.1507
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011810
(v2.0)
Lsm167207
350/1500.7059223/1500.4533225/1504.0802456/1502.91455/150-2.625658/150-1.9426
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011810
(v2.0)
Lsm167207
58.397614540.27
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011810
(v2.0)
Lsm167207
21.703410620.47
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011864
(v1.0)
Lsm1NM_02603267207
5.122765.770454.534513.486685.95407
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011864
(v1.0)
Lsm1NM_02603267207
5.36315.38464.396233.804715.62072
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011864
(v1.0)
Lsm1NM_02603267207
5.356320.9298866.29569
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011864
(v1.0)
Lsm1NM_02603267207
5.22835.712516.98362
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011864
(v1.0)
Lsm1NM_02603267207
5.467777.01231
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011864
(v1.0)
Lsm1NM_02603267207
5.359430.917157.6594
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011864
(v1.0)
Lsm1NM_02603267207
4.198253.366533.69739
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011864
(v1.0)
Lsm1NM_02603267207
3.763454.07463
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011864
(v1.0)
Lsm1NM_02603267207
0.4604484.10545
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011864
(v1.0)
Lsm1NM_02603267207
27.951216.7005
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011864
(v1.0)
1423873_atMm.485816Lsm1NM_026032.167207
240.5346302.075194.85199.65
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011864
(v1.0)
A_51_P206655Lsm1AK04129067207
11P1.5860.136P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011864
(v1.0)
Lsm167207
332875