DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011865
GeneLsm10
Synonyms
Desc.U7 snRNP-specific Sm-like protein LSM10
LocusNM_001163266 chr4:125773897-125775828(+)
NM_138721 chr4:125773897-125775828(+)
DB links


Entrez 116748
MGI 2151045
Ensembl ENSMUSG00000050188
Vega OTTMUSG00000009295
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011811
(v2.0)
Lsm10NM_001163266,NM_138721116748
16.486478.874334.31859.8223810.726731.825712.821344.512411.407734.3295
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011865
(v1.0)
Lsm10116748
Maternal RNA0.89792
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011811
(v2.0)
Lsm10116748
632/494-0.1571339/494-0.657754/4940.399185/494-1.198140/494-1.5451339/494-1.1391
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011811
(v2.0)
Lsm10116748
239/179-0.0952122/179-0.664640/1791.380271/179-0.002710/179-1.999868/179-1.972
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011811
(v2.0)
Lsm10116748
101.899213376.62
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011811
(v2.0)
Lsm10116748
40.54647057.92
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
81.98623.69757.337967.427169.00037
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
99.461926.34968.234048.5541110.4419
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
85.72396.0263725.8545
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
83.67523.459633.1233
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
26.759837.3176
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
85.77385.9438336.3285
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
6.79387.171227.92959
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
8.461819.28517
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
14.427547.8739
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011865
(v1.0)
Lsm10NM_001163266,NM_138721116748
3.440624.52499
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011865
(v1.0)
19321L0265G09-3Mm.41865Lsm10-pending116748
U004810NAP024190-001Lsm10;TC9365253.55973.71594.01493.77863.50053.64033.5937
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011865
(v1.0)
1417515_atMm.41865Lsm10NM_138721.2,NM_001163266.1116748
1122.85673.65431.9250239.35
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011865
(v1.0)
A_51_P106859Lsm10NM_138721116748
11P0.7210.189P
Proteome N/A