DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011868
GeneLsm14a
SynonymsTral
Desc.LSM14 homolog A (SCD6, S. cerevisiae)
LocusNM_025948 chr7:35129739-35174559(-)
DB links


Entrez 67070
MGI 1914320
Ensembl ENSMUSG00000066568
Vega OTTMUSG00000008387
Featureprotein-coding
GO(BP)
  •   6 Terms
      regulation of translation (GO:0006417)
      multicellular organismal development (GO:0007275)
      cytoplasmic mRNA processing body assembly (GO:0033962)
      RIG-I signaling pathway (GO:0039529)
      defense response to virus (GO:0051607)
      positive regulation of type I interferon-mediated signaling pathway (GO:0060340)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011814
(v2.0)
Lsm14aNM_02594867070
26.3552169.9418.077115.58233.835136.463118.4198437.82738.2135.1157
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011868
(v1.0)
Lsm14a67070
Minor ZGA0.96585
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011814
(v2.0)
Lsm14a67070
695/4000.2836503/4000.2139253/4002.9028617/4001.949819/400-2.2791126/400-2.2523
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011814
(v2.0)
Lsm14a67070
436/2000.609258/2000.25244/2003.8089596/2002.8910/200-5.615852/200-2.5085
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011814
(v2.0)
Lsm14a67070
38.703614726.33
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011814
(v2.0)
Lsm14a67070
12.690411710.85
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011868
(v1.0)
Lsm14aNM_02594867070
176.563288.986.019123.445912.9379
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011868
(v1.0)
Lsm14aNM_02594867070
297.078600.599162.28445.976918.7073
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011868
(v1.0)
Lsm14aNM_02594867070
184.6139.63836315.196
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011868
(v1.0)
Lsm14aNM_02594867070
180.2285.999324.471
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011868
(v1.0)
Lsm14aNM_02594867070
964.1655.909
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011868
(v1.0)
Lsm14aNM_02594867070
184.729.50634355.869
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011868
(v1.0)
Lsm14aNM_02594867070
79.640322.637926.5637
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011868
(v1.0)
Lsm14aNM_02594867070
72.813580.9694
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011868
(v1.0)
Lsm14aNM_02594867070
214.647166.809
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011868
(v1.0)
Lsm14aNM_02594867070
149.869198.186
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011868
(v1.0)
6532H3026G07-3Mm.282852700023B17Rik67070
U037100NAP002490-0015730403O13Rik;Bbx;TC830610,TC8550763.18593.39582.8243.20613.5733.97543.4896
0011868
(v1.0)
12583H3146F12-3Mm.282852700023B17Rik67070
U028428NAP093835-0012700023B17Rik;TC830609,TC830608Q9CPU5U,F,24.73624.63293.88893.89653.75693.78823.8603
0011868
(v1.0)
16499K0424A09-3Mm.282852700023B17Rik67070
U037100NAP032682-15730403O13Rik;Bbx;TC830612,TC8306102.41472.59672.58162.53262.3832.47712.2533
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011868
(v1.0)
1428436_atMm.276503Lsm14aNM_025948.267070
2321.1755221.3253195.9428.325787.275
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011868
(v1.0)
A_51_P3208602700023B17RikNM_02594867070
11P0.790.273P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011868
(v1.0)
Lsm14a67070
230230