DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011870
GeneLsm2
SynonymsD17H6S56E-2
D17H6S56E2
Dmapl
Dmpkap
G7b
Sm-X5
SmX5
snRNP
Desc.LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LocusNM_001204274 chr17:35118799-35122836(+)
NM_001110101 chr17:35118799-35122838(+)
NM_001204273 chr17:35119075-35122836(+)
NM_030597 chr17:35119075-35122838(+)
DB links


Entrez 27756
MGI 90676
Ensembl ENSMUSG00000007050
Vega OTTMUSG00000037141
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011816
(v2.0)
Lsm2NM_001110101,NM_001204273,NM_001204274,NM_03059727756
21.313535.899936.136682.184299.382984.552138.13158.977996.144597.8802
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011870
(v1.0)
Lsm227756
Major ZGA0.98374
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011816
(v2.0)
Lsm227756
704/4140.2526455/4140.02289/4143.04581119/4142.758331/414-1.6501245/414-1.3508
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011816
(v2.0)
Lsm227756
317/1630.4444215/1630.2817153/1633.4155588/1633.16269/163-2.005475/163-1.6992
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011816
(v2.0)
Lsm227756
65.355325126.04
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011816
(v2.0)
Lsm227756
18.205510717.01
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
37.472825.046361.513869.352226.5595
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
47.302230.028485.0971104.18850.0585
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
39.18127.2630527.3261
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
38.244824.794844.0515
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
35.337552.7987
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
39.2047.1635748.3142
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
56.952266.962366.8807
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
147.07135.377
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
16.375995.6144
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011870
(v1.0)
Lsm2NM_001110101,NM_03059727756
40.938321.2014
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011870
(v1.0)
6550H3027G01-3Mm.7312D17H6S56E-227756
U017880NAP007364-001D17H6S56E-2;TC942812,TC942811,TC843094O35901U,F3.49793.53013.56873.80593.73433.81023.7034
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011870
(v1.0)
1451884_a_atMm.165735Lsm2NM_001204273.1,NM_030597.3,NM_001110101.2,NM_001204274.127756
0059.82578.968.375
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011870
(v1.0)
Lsm227756
131355