DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0011875

Gene

Lsm7

Synonyms

Description

LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Locus

NM_025349 UCSC: chr10:80315570-80317954(-) OLP: chr10:80315570-80317954(-)

DB links

Entrez 66094
MGI 1913344
Ensembl ENSMUSG00000035215

Feature

protein-coding

GO_BP

1 Terms

GO_MF

2 Terms

GO_CC

1 Terms

KEGG

see DBTMEE:2011821 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0011875 (v1.0)	Lsm7	NM_025349	66094	28.0886	28.5957	23.7872	17.8174	38.0316

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0011875 (v1.0)	Lsm7	NM_025349	66094	29.3692	13.8801	31.1985

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0011875 (v1.0)	Lsm7	NM_025349	66094	28.6673	28.3085	48.9205

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0011875 (v1.0)	Lsm7	NM_025349	66094	29.3863	13.69	53.6543

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0011875 (v1.0)	Lsm7	NM_025349	66094	22.0232	17.2034	33.0301

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0011875 (v1.0)	Lsm7	NM_025349	66094	0.68804	40.4464

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0011875 (v1.0)	Lsm7	NM_025349	66094	113.917	137.691

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0011875 (v1.0)	564	C0118C02-3	Mm.28470	0910001B06Rik	66094		NAP083183-1		TC825663,TC825660			2.456	2.7876	2.6761	2.7015	2.3336	2.6261	2.504
0011875 (v1.0)	8958	H3074F11-3	Mm.28470	0910001B06Rik	66094			0910001B06Rik				2.6382	2.8294	2.7504	2.6345	2.6843	2.5291	2.5109

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0011875 (v1.0)	1417313_at	Mm.247080~Mm.379101	Gm10146~Lsm7	~NM_025349.2	100041500 66094	0	0	199.6	303.975	294.625

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0011875 (v1.0)	A_51_P200044	Lsm7	NM_025349	66094	1	1	P	1.187	0.335	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0011875 (v1.0)	Lsm7	66094	3	5	3	46	78	7