DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011875
GeneLsm7
Synonyms
Desc.LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LocusNM_025349 chr10:80315570-80317954(-)
DB links


Entrez 66094
MGI 1913344
Ensembl ENSMUSG00000035215
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011821
(v2.0)
Lsm7NM_02534966094
37.953727.00841.058931.933725.5144249.64253.551265.956547.7754310.9
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011875
(v1.0)
Lsm766094
Minor ZGA0.94399
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011821
(v2.0)
Lsm766094
908/6310.0122374/631-0.8689100/6310.9303293/6310.223733/631-2.1657358/631-1.4132
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011821
(v2.0)
Lsm766094
392/275-0.0014157/275-0.920291/2751.959258/2751.231716/275-1.9797133/275-1.6363
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011821
(v2.0)
Lsm766094
95.419817056.13
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011821
(v2.0)
Lsm766094
29.70919830.32
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011875
(v1.0)
Lsm7NM_02534966094
28.088628.595723.787217.817438.0316
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011875
(v1.0)
Lsm7FR317394,FR404968,NM_02534966094
0.719570.4910091.000421.336415.37954
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011875
(v1.0)
Lsm7NM_02534966094
29.369213.880131.1985
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011875
(v1.0)
Lsm7NM_02534966094
28.667328.308548.9205
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011875
(v1.0)
Lsm7FR317394,FR404968,NM_02534966094
0.4981220.141829
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011875
(v1.0)
Lsm7NM_02534966094
29.386313.6953.6543
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011875
(v1.0)
Lsm7NM_02534966094
22.023217.203433.0301
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011875
(v1.0)
Lsm7FR317394,FR404968,NM_02534966094
1.321890.625553
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011875
(v1.0)
Lsm7NM_02534966094
0.6880440.4464
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011875
(v1.0)
Lsm7NM_02534966094
113.917137.691
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011875
(v1.0)
564C0118C02-3Mm.284700910001B06Rik66094
NAP083183-1TC825663,TC8256602.4562.78762.67612.70152.33362.62612.504
0011875
(v1.0)
8958H3074F11-3Mm.284700910001B06Rik66094
0910001B06Rik2.63822.82942.75042.63452.68432.52912.5109
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011875
(v1.0)
1417313_atMm.247080~Mm.379101Gm10146~Lsm7~NM_025349.2100041500
66094
00199.6303.975294.625
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011875
(v1.0)
A_51_P200044Lsm7NM_02534966094
11P1.1870.335P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011875
(v1.0)
Lsm766094
35346787