DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011943
GeneLyrm4
SynonymsLOC380840
Desc.LYR motif containing 4
LocusNM_201358 chr13:36070666-36209226(-)
DB links


Entrez 380840
MGI 2683538
Ensembl ENSMUSG00000046573
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011891
(v2.0)
Lyrm4NM_201358380840
4.7877635.024668.341610.44474.394847.9237711.838267.6896.675818.35835
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011943
(v1.0)
Lyrm4380840
Minor ZGA0.99957
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011891
(v2.0)
Lyrm4380840
739/4290.2712510/4290.133292/4293.0107478/4291.481927/429-1.8936218/429-1.5694
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011891
(v2.0)
Lyrm4380840
382/1690.6606242/1690.3997287/1694.2701459/1692.754610/169-1.918891/169-1.4771
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011891
(v2.0)
Lyrm4380840
52.459513339.44
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011891
(v2.0)
Lyrm4380840
13.31039114.63
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011943
(v1.0)
Lyrm4NM_201358380840
36.401247.10277.770063.034948.3661
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011943
(v1.0)
Lyrm4NM_201358380840
47.434154.019.178473.660379.89513
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011943
(v1.0)
Lyrm4NM_201358380840
38.06081.7509351.3901
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011943
(v1.0)
Lyrm4NM_201358380840
37.151146.629850.0584
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011943
(v1.0)
Lyrm4NM_201358380840
54.854358.299
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011943
(v1.0)
Lyrm4NM_201358380840
38.08291.7269554.9024
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011943
(v1.0)
Lyrm4NM_201358380840
7.193862.930364.58645
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011943
(v1.0)
Lyrm4NM_201358380840
3.620975.44602
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011943
(v1.0)
Lyrm4NM_201358380840
51.56647.11407
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011943
(v1.0)
Lyrm4NM_201358380840
11.88516.7096
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011943
(v1.0)
1455588_atMm.390576Lyrm4NM_201358.2380840
631.11753.8428.4326.175330.4
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011943
(v1.0)
A_52_P498355BC034664NM_201358380840
11P0.710.181P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011943
(v1.0)
Lyrm4380840
120120