DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0012154
GeneMbd1
SynonymsCxxc3
PCM1
Desc.methyl-CpG binding domain protein 1
LocusNM_013594 chr18:74427942-74442338(+)
DB links


Entrez 17190
MGI 1333811
Ensembl ENSMUSG00000024561
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2012126
(v2.0)
Mbd1NM_01359417190
26.81876.624296.875156.777714.991526.8917213.6529.237796.500845.88804
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0012154
(v1.0)
Mbd117190
Minor ZGA0.91458
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012126
(v2.0)
Mbd117190
404/2620.1116221/262-0.360282/2621.8774194/2620.89146/262-3.19155/262-2.8177
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012126
(v2.0)
Mbd117190
230/1320.2863114/132-0.324974/1322.6586179/1321.75155/132-2.446429/132-2.7232
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012126
(v2.0)
Mbd117190
45.820210344.49
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012126
(v2.0)
Mbd117190
18.17617424.56
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012154
(v1.0)
Mbd1NM_01359417190
6.885514.782715.044553.460369.69429
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012154
(v1.0)
Mbd1FR115544,FR163449,NM_01359417190
65.643460.903547.972538.9205102.19
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0012154
(v1.0)
Mbd1NM_01359417190
7.199449.807875.21804
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0012154
(v1.0)
Mbd1NM_01359417190
7.027364.734696.85384
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0012154
(v1.0)
Mbd1FR115544,FR163449,NM_01359417190
85.2933137.99
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0012154
(v1.0)
Mbd1NM_01359417190
7.203629.673547.51706
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0012154
(v1.0)
Mbd1NM_01359417190
4.670473.341124.49973
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0012154
(v1.0)
Mbd1FR115544,FR163449,NM_01359417190
49.525478.4607
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0012154
(v1.0)
Mbd1NM_01359417190
1.623941.45626
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0012154
(v1.0)
Mbd1NM_01359417190
0.04239580
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0012154
(v1.0)
5224AF072240.1Mm.22522Mbd117190
U018892NAP003425-001Mbd1;TC827151,TC826664Q9DC19U,F,22.39762.59272.59252.61772.35322.48232.4838
0012154
(v1.0)
14623J0730F04-3Mm.22522Mbd117190
U018892NAP003425-003Mbd1;TC864981Q9DC19U,F,21.86462.04752.21982.37942.04772.30112.3383
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0012154
(v1.0)
1417968_a_atMm.22522Mbd1NM_013594.217190
87.725000123.675
0012154
(v1.0)
1437061_atMm.22522Mbd1NM_013594.217190
000086.7
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0012154
(v1.0)
A_51_P143224Mbd1NM_01359417190
11P0.6450.167P
Proteome N/A