DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0012224
GeneMdc1
SynonymsNFBD1
Desc.mediator of DNA damage checkpoint 1
LocusNM_001010833 chr17:35978443-35996615(+)
DB links


Entrez 240087
MGI 3525201
Ensembl ENSMUSG00000061607
Vega OTTMUSG00000037407
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2012198
(v2.0)
Mdc1NM_001010833240087
3.599265.197556.4187311.43286.3715312.67627.50447.933495.1052810.558
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0012224
(v1.0)
Mdc1240087
2-Cell Transient0.98406
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012198
(v2.0)
Mdc1240087
661/4230.1309408/423-0.1679227/4232.6686694/4232.039131/423-1.6809225/423-1.5038
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012198
(v2.0)
Mdc1240087
292/1830.1605205/1830.0473109/1832.7741257/1831.80714/183-3.168441/183-2.713
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012198
(v2.0)
Mdc1240087
43.047522519.13
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012198
(v2.0)
Mdc1240087
14.721110114.58
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012224
(v1.0)
Mdc1NM_001010833240087
5.403934.429298.495924.397895.19152
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012224
(v1.0)
Mdc1FR130675,FR150913,NM_001010833240087
78.496943.281378.3659.080957.8277
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0012224
(v1.0)
Mdc1NM_001010833240087
5.650311.316294.83245
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0012224
(v1.0)
Mdc1NM_001010833240087
5.515264.384825.87805
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0012224
(v1.0)
Mdc1FR130675,FR150913,NM_001010833240087
166.876195.843
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0012224
(v1.0)
Mdc1NM_001010833240087
5.653591.298266.44685
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0012224
(v1.0)
Mdc1NM_001010833240087
7.865894.246343.5342
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0012224
(v1.0)
Mdc1FR130675,FR150913,NM_001010833240087
43.618344.8269
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0012224
(v1.0)
Mdc1NM_001010833240087
14.421828.1592
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0012224
(v1.0)
Mdc1NM_001010833240087
0.2196650.377804
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0012224
(v1.0)
1434837_atMm.218511Mdc1NM_001010833.2240087
310.075232.025618.025451.25653.875
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0012224
(v1.0)
Mdc1240087
110120