DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0012246
GeneMed1
SynonymsCRSP210
DRIP205
l11Jus15
PBP
Pparbp
TRAP 220
TRAP220
Desc.mediator complex subunit 1
LocusNM_134027 chr11:98013469-98054607(-)
NM_013634 chr11:98014975-98054220(-)
NM_001080118 chr11:98014975-98054607(-)
DB links


Entrez 19014
MGI 1100846
Ensembl ENSMUSG00000018160
Vega OTTMUSG00000002636
Featureprotein-coding
GO(BP)
  •   64 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      cell morphogenesis (GO:0000902)
      angiogenesis (GO:0001525)
      in utero embryonic development (GO:0001701)
      liver development (GO:0001889)
      embryonic placenta development (GO:0001892)
      lens development in camera-type eye (GO:0002088)
      thyroid hormone mediated signaling pathway (GO:0002154)
      ventricular trabecula myocardium morphogenesis (GO:0003222)
      retinal pigment epithelium development (GO:0003406)
      DNA replication (GO:0006260)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      regulation of transcription from RNA polymerase I promoter (GO:0006356)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      transcription from RNA polymerase II promoter (GO:0006366)
      transcription initiation from RNA polymerase II promoter (GO:0006367)
      thyroid hormone generation (GO:0006590)
      androgen biosynthetic process (GO:0006702)
      multicellular organismal development (GO:0007275)
      brain development (GO:0007420)
      heart development (GO:0007507)
      lactation (GO:0007595)
      organ morphogenesis (GO:0009887)
      positive regulation of gene expression (GO:0010628)
      negative regulation of keratinocyte proliferation (GO:0010839)
      keratinocyte differentiation (GO:0030216)
      monocyte differentiation (GO:0030224)
      intracellular steroid hormone receptor signaling pathway (GO:0030518)
      androgen receptor signaling pathway (GO:0030521)
      organ regeneration (GO:0031100)
      positive regulation of intracellular estrogen receptor signaling pathway (GO:0033148)
      positive regulation of protein import into nucleus, translocation (GO:0033160)
      mammary gland epithelial cell proliferation (GO:0033598)
      positive regulation of mammary gland epithelial cell proliferation (GO:0033601)
      embryonic heart tube development (GO:0035050)
      embryonic hindlimb morphogenesis (GO:0035116)
      embryonic hemopoiesis (GO:0035162)
      peroxisome proliferator activated receptor signaling pathway (GO:0035357)
      cellular response to hepatocyte growth factor stimulus (GO:0035729)
      megakaryocyte development (GO:0035855)
      mRNA transcription from RNA polymerase II promoter (GO:0042789)
      camera-type eye development (GO:0043010)
      negative regulation of apoptotic process (GO:0043066)
      fat cell differentiation (GO:0045444)
      positive regulation of keratinocyte differentiation (GO:0045618)
      negative regulation of neuron differentiation (GO:0045665)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      erythrocyte development (GO:0048821)
      enucleate erythrocyte development (GO:0048822)
      positive regulation of interferon-gamma-mediated signaling pathway (GO:0060335)
      mammary gland branching involved in thelarche (GO:0060744)
      mammary gland branching involved in pregnancy (GO:0060745)
      epithelial cell proliferation involved in mammary gland duct elongation (GO:0060750)
      positive regulation of G0 to G1 transition (GO:0070318)
      ERK1 and ERK2 cascade (GO:0070371)
      regulation of vitamin D receptor signaling pathway (GO:0070562)
      cellular response to epidermal growth factor stimulus (GO:0071364)
      cellular response to steroid hormone stimulus (GO:0071383)
      cellular response to thyroid hormone stimulus (GO:0097067)
      positive regulation of receptor activity (GO:2000273)
      positive regulation of hepatocyte proliferation (GO:2000347)
      regulation of RNA biosynthetic process (GO:2001141)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2012220
(v2.0)
Med1NM_001080118,NM_013634,NM_13402719014
7.9376334.682574.04457.398544.013311.245239.419262.151836.499112.9094
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0012246
(v1.0)
Med119014
Minor ZGA0.96126
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012220
(v2.0)
Med119014
679/3900.2865435/3900.0412131/3901.9939342/3901.136753/390-0.81434/390-0.4438
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012220
(v2.0)
Med119014
309/1380.6464187/1380.3201120/1383.2898306/1382.45887/138-2.093641/138-2.3084
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012220
(v2.0)
Med119014
64.169912053.47
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012220
(v2.0)
Med119014
16.41266923.79
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
36.04651.204142.688830.515127.8648
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
268.107353.878212.034147.347101.981
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
37.68942.9047755.8648
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
36.788650.6945.9642
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
1505.23896.225
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
37.71132.8649850.4119
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
39.523129.463525.2111
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
351.21240.835
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
18.301341.127
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0012246
(v1.0)
Med1NM_001080118,NM_013634,NM_13402719014
3.312579.77749
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0012246
(v1.0)
3426C0658G12-3Mm.12926Pparbp19014
U033361NAP094715-001Pparbp;TC815266O88323U,F,22.62262.85822.59552.75322.28992.62122.6996
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0012246
(v1.0)
1448708_atMm.12926Med1NM_001080118.1,NM_013634.2,NM_134027.219014
206.15258.325362.15200.2123.55
0012246
(v1.0)
1439408_a_atMm.12926Med1NM_001080118.1,NM_013634.2,NM_134027.219014
0044.800
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0012246
(v1.0)
A_51_P324082PparbpNM_01363419014
11P0.3820.0657P
0012246
(v1.0)
A_52_P176300PparbpNM_13402719014
11P0.9130.533P
0012246
(v1.0)
A_52_P301166PparbpNM_01363419014
11P1.460.208P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0012246
(v1.0)
Med119014
010010