DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0012251
GeneMed13
SynonymsThrap1
Trap240
Desc.mediator complex subunit 13
LocusNM_001080931 chr11:86079217-86171027(-)
DB links


Entrez 327987
MGI 3029632
Ensembl ENSMUSG00000034297
Vega OTTMUSG00000001199
Featureprotein-coding
GO(BP)
  •   8 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      transcription initiation from RNA polymerase II promoter (GO:0006367)
      intracellular steroid hormone receptor signaling pathway (GO:0030518)
      androgen receptor signaling pathway (GO:0030521)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2012225
(v2.0)
Med13NM_001080931327987
6.1473513.132734.067565.659837.0564.3566626.6626.32633.42623.90882
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0012251
(v1.0)
Med13327987
2-Cell Transient0.9653
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012225
(v2.0)
Med13327987
628/3430.3588479/3430.3647139/3432.2581503/3431.87690/3430.1261364/343-0.5118
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012225
(v2.0)
Med13327987
305/1340.6698192/1340.4001119/1343.3168349/1342.68969/134-1.730578/134-1.363
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012225
(v2.0)
Med13327987
39.275415026.18
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012225
(v2.0)
Med13327987
6.45161135.71
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012251
(v1.0)
Med13NM_001080931327987
13.649723.456148.855725.631718.6281
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012251
(v1.0)
Med13FR010606,FR133294,FR233876,FR248703,NM_001080931327987
60.0405101.599238.107135.79144.191
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0012251
(v1.0)
Med13NM_001080931327987
14.2722.2481525.5911
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0012251
(v1.0)
Med13NM_001080931327987
13.930923.220619.4705
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0012251
(v1.0)
Med13FR010606,FR133294,FR233876,FR248703,NM_001080931327987
153.5789.9852
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0012251
(v1.0)
Med13NM_001080931327987
14.28032.2173621.3545
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0012251
(v1.0)
Med13NM_001080931327987
45.232824.748523.1165
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0012251
(v1.0)
Med13FR010606,FR133294,FR233876,FR248703,NM_001080931327987
140.373109.677
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0012251
(v1.0)
Med13NM_001080931327987
16.990248.5388
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0012251
(v1.0)
Med13NM_001080931327987
0.894764.0338
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0012251
(v1.0)
1453160_atMm.341886Med13NM_001080931.1327987
183.1203.45370335.95402.825
0012251
(v1.0)
1438725_atMm.341886Med13NM_001080931.1327987
0188.41025.65175.9161.45
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0012251
(v1.0)
A_52_P194929Thrap1XM_109726327987
11P0.4570.159P
0012251
(v1.0)
A_52_P515826Thrap1AK042549327987
11P2.3160.0753P
0012251
(v1.0)
A_52_P665326Thrap1AK042549327987
11P0.5150.11P
Proteome N/A