DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0012267
GeneMed28
SynonymsEg1
magicin
Desc.mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)
LocusNM_025895 chr5:45911468-45920523(+)
DB links


Entrez 66999
MGI 1914249
Ensembl ENSMUSG00000015804
Vega OTTMUSG00000027798
Featureprotein-coding
GO(BP)
  •   4 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      stem cell maintenance (GO:0019827)
      negative regulation of smooth muscle cell differentiation (GO:0051151)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2012241
(v2.0)
Med28NM_02589566999
6.2602131.462643.38286.281558.825518.400814.6480953.16748.727759.33371
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0012267
(v1.0)
Med2866999
Minor ZGA0.97167
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012241
(v2.0)
Med2866999
651/4560.0008427/456-0.2105100/4561.3885265/4560.545717/456-2.6183149/456-2.2016
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012241
(v2.0)
Med2866999
275/1870.0433180/187-0.170399/1872.6073244/1871.70174/187-3.198958/187-2.2588
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012241
(v2.0)
Med2866999
65.949312851.52
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012241
(v2.0)
Med2866999
17.11057622.51
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012267
(v1.0)
Med28NM_02589566999
32.696530.08674.680876.124673.31623
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012267
(v1.0)
Med28FR315734,NM_02589566999
63.538551.47949.043938.983376.10139
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0012267
(v1.0)
Med28NM_02589566999
34.18722.2894232.8253
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0012267
(v1.0)
Med28NM_02589566999
33.370129.784639.4303
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0012267
(v1.0)
Med28FR315734,NM_02589566999
52.276747.6566
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0012267
(v1.0)
Med28NM_02589566999
34.20712.2580743.2458
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0012267
(v1.0)
Med28NM_02589566999
4.333765.913616.03535
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0012267
(v1.0)
Med28FR315734,NM_02589566999
8.8865410.144
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0012267
(v1.0)
Med28NM_02589566999
11.135116.4714
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0012267
(v1.0)
Med28NM_02589566999
19.498318.463
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0012267
(v1.0)
1100C0178C05-3Mm.30624Eg1-pending66999
U005555NAP094909-001Eg1;TC799647Q920D3U,F,23.24783.49842.93743.11452.87213.02452.8538
0012267
(v1.0)
15681K0225D02-3Mm.30624Eg1-pending66999
U005555NAP094909-001Eg1;TC799647Q920D3U,F,22.72712.63422.3532.68512.45772.47632.473
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0012267
(v1.0)
1416508_atMm.283045Med28NM_025895.466999
3871.52852.9752012.2731.05695.725
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0012267
(v1.0)
A_52_P552580Med28NM_02589566999
11P0.550.105P
Proteome N/A