DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0012269
GeneMed30
SynonymsThrap6
Trap25
Desc.mediator complex subunit 30
LocusNM_027212 chr15:52544000-52561986(+)
DB links


Entrez 69790
MGI 1917040
Ensembl ENSMUSG00000038622
Featureprotein-coding
GO(BP)
  •   7 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      transcription initiation from RNA polymerase II promoter (GO:0006367)
      stem cell maintenance (GO:0019827)
      intracellular steroid hormone receptor signaling pathway (GO:0030518)
      androgen receptor signaling pathway (GO:0030521)
      positive regulation of transcription, DNA-dependent (GO:0045893)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2012243
(v2.0)
Med30NM_02721269790
17.6075140.366279.95734.55818.8330652.936831.8783228.78712.780254.7351
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0012269
(v1.0)
Med3069790
Minor ZGA0.99842
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012243
(v2.0)
Med3069790
611/4210.0245431/421-0.082184/4211.2518206/4210.298569/421-0.5448458/421-0.4765
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2012243
(v2.0)
Med3069790
279/1860.0718209/1860.051781/1862.3283190/1861.350217/186-1.3434116/186-1.2695
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012243
(v2.0)
Med3069790
58.640910655.32
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2012243
(v2.0)
Med3069790
15.89865031.8
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012269
(v1.0)
Med30NM_02721269790
145.877193.15425.7176.0973122.5968
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0012269
(v1.0)
Med30NM_02721269790
500.12652.06774.397625.669771.4865
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0012269
(v1.0)
Med30NM_02721269790
152.5286.43925210.735
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0012269
(v1.0)
Med30NM_02721269790
148.882191.214169.514
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0012269
(v1.0)
Med30NM_02721269790
647.438399.943
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0012269
(v1.0)
Med30NM_02721269790
152.6166.35105185.918
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0012269
(v1.0)
Med30NM_02721269790
23.80995.88728.86829
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0012269
(v1.0)
Med30NM_02721269790
7.0205111.231
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0012269
(v1.0)
Med30NM_02721269790
237.88657.4283
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0012269
(v1.0)
Med30NM_02721269790
286.253281.5
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0012269
(v1.0)
8476H3066G07-31810038N03Rik69790
U016244NAP008259-0011810038N03Rik;TC910394Q9CQI9U,F,24.66854.7934.49544.12943.73394.01173.8619
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0012269
(v1.0)
1448917_atMm.195562Med30NM_027212.269790
1446.4253263.825892.075172.775426.975
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0012269
(v1.0)
A_51_P161874Thrap6NM_02721269790
11P0.5030.0917P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0012269
(v1.0)
Med3069790
010010