DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013292
GeneMrpl40
SynonymsNlvcf
Desc.mitochondrial ribosomal protein L40
LocusNM_010922 chr16:18872111-18876730(-)
DB links


Entrez 18100
MGI 1332635
Ensembl ENSMUSG00000022706
Vega OTTMUSG00000026128
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2013745
(v2.0)
Mrpl40NM_01092218100
32.527944.203135.160880.724676.974454.651620.11333.034684.953669.3858
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013292
(v1.0)
Mrpl4018100
Major ZGA0.98368
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2013745
(v2.0)
Mrpl4018100
714/4500.1529489/4500.0037201/4502.4071418/4501.220312/450-3.0688111/450-2.6024
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2013745
(v2.0)
Mrpl4018100
387/1800.5888242/1800.3093198/1803.6517405/1802.48476/180-2.659763/180-2.0876
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2013745
(v2.0)
Mrpl4018100
41.712813231.6
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2013745
(v2.0)
Mrpl4018100
10.865110010.87
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013292
(v1.0)
Mrpl40NM_01092218100
45.945324.525660.176853.468514.2621
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013292
(v1.0)
Mrpl40NM_01092218100
55.03826.67767.369960.749716.3438
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013292
(v1.0)
Mrpl40NM_01092218100
48.0411.895826.758
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0013292
(v1.0)
Mrpl40NM_01092218100
46.891824.279424.4934
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013292
(v1.0)
Mrpl40NM_01092218100
27.081527.4492
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0013292
(v1.0)
Mrpl40NM_01092218100
48.067911.732926.8635
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013292
(v1.0)
Mrpl40NM_01092218100
55.714351.62658.9754
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013292
(v1.0)
Mrpl40NM_01092218100
60.092369.3636
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013292
(v1.0)
Mrpl40NM_01092218100
17.642367.7799
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013292
(v1.0)
Mrpl40NM_01092218100
59.557825.9148
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0013292
(v1.0)
1390C0205D06-3Mm.20918Mrpl4018100
U036866NAP010185-001TC936201Q9Z2Q5U,F,23.57513.85613.94774.44193.89124.05983.8458
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013292
(v1.0)
1448849_atMm.20918Mrpl40NM_010922.218100
387.15213.25668.775554.475578.95
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013292
(v1.0)
A_51_P278532Mrpl40NM_01092218100
11P1.0010.992P
0013292
(v1.0)
A_51_P420627Mrpl40NM_01092218100
11P0.9620.766P
0013292
(v1.0)
A_51_P420630Mrpl40NM_01092218100
11P0.8610.374P
Proteome N/A