DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0013365

Gene

Msh3

Synonyms

D13Em1
Rep-3
Rep3

Description

mutS homolog 3 (E. coli)

Locus

NM_010829 UCSC: chr13:92981836-93124958(-) OLP: chr13:92981836-93124958(-)

DB links

Entrez 17686
MGI 109519
Ensembl ENSMUSG00000014850

Feature

protein-coding

GO_BP

10 Terms

GO_MF

11 Terms

GO_CC

3 Terms

KEGG

3 Terms

see DBTMEE:2013819 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0013365 (v1.0)	Msh3	NM_010829	17686	35.2786	26.3152	9.02274	9.87964	6.28568

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0013365 (v1.0)	Msh3	NM_010829	17686	36.887	1.13059	28.7105

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0013365 (v1.0)	Msh3	NM_010829	17686	36.0054	26.051	24.0178

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0013365 (v1.0)	Msh3	NM_010829	17686	36.9084	1.11511	26.3419

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0013365 (v1.0)	Msh3	NM_010829	17686	8.35365	9.53919	10.6014

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0013365 (v1.0)	Msh3	NM_010829	17686	17.6368	2.99359

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0013365 (v1.0)	Msh3	NM_010829	17686	10.3509	5.88931

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0013365 (v1.0)	1824	C0259G01-3	Mm.116254	Msh3	17686	U035020	NAP007150-002	Msh3;	TC815458,TC815457,TC815456	P13705	U,F,2	3.4234	3.4058	2.8006	2.8711	2.2754	2.5673	2.3494
0013365 (v1.0)	16722	K0446C12-3	Mm.116254	Msh3	17686	U035020	NAP007150-002	Msh3;	TC815458,TC815457	P13705	U,F,2	2.7816	2.5553	2.6008	2.4623	2.4452	2.5797	2.4743

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0013365 (v1.0)	1422261_a_at	Mm.343101	Msh3	NM_010829.2	17686	47.55	44.7	45.05	0	0
0013365 (v1.0)	1424166_at	Mm.343101	Msh3	NM_010829.2	17686	793.275	514.15	752.425	0	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0013365 (v1.0)	A_51_P454166	Msh3	NM_010829	17686	1	1	P	0.373	0.0836	P
0013365 (v1.0)	A_52_P54561	Msh3	NM_010829	17686	1	1	P	1.324	0.217	P

N/A