DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013764
GeneNde1
SynonymsmNudE
Desc.nuclear distribution gene E homolog 1 (A nidulans)
LocusNM_023317 chr16:14163368-14193016(+)
NM_001114085 chr16:14163368-14193016(+)
DB links


Entrez 67203
MGI 1914453
Ensembl ENSMUSG00000022678
Vega OTTMUSG00000027034
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014215
(v2.0)
Nde1NM_001114085,NM_001285503,NM_001285504,NM_02331767203
10.962714.473622.745921.54027.8500330.291730.065921.85466.6545132.141
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013764
(v1.0)
Nde167203
Minor ZGA0.95113
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014215
(v2.0)
Nde167203
720/4480.1713418/448-0.2157205/4482.4417516/4481.529911/448-3.178107/448-2.6482
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014215
(v2.0)
Nde167203
305/1790.2547163/179-0.249878/1792.3264141/1790.97716/179-2.651844/179-2.5829
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014215
(v2.0)
Nde167203
39.646817123.19
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014215
(v2.0)
Nde167203
9.76528112.06
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
15.043415.685815.75385.0784921.0659
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
18.823417.787218.898310.163125.3423
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
15.72934.0081917.1136
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
15.353315.528315.7533
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
18.063819.2082
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
15.73843.9532917.2777
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
14.58564.903484.58277
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
10.05215.76448
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
8.233625.33837
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013764
(v1.0)
Nde1NM_001114085,NM_02331767203
18.618929.1078
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0013764
(v1.0)
11293H3111C12-3Nude-pending67203
U016840NAP006385-001Nude;TC904206,TC904205,TC877180Q9CZA6U,F,23.53113.53513.63683.48883.36453.41843.3332
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013764
(v1.0)
1435737_a_atMm.24105Nde1NM_023317.2,NM_001114085.167203
64.85113.125245.8750121.225
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013764
(v1.0)
A_51_P438909Nde1NM_02331767203
11P1.1060.499P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0013764
(v1.0)
Nde167203
010010