DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013766
GeneNdfip1
Synonyms
Desc.Nedd4 family interacting protein 1
LocusNM_022996 chr18:38578629-38624060(+)
DB links


Entrez 65113
MGI 1929601
Ensembl ENSMUSG00000024425
Featureprotein-coding
GO(BP)
  •   17 Terms
      regulation of myeloid leukocyte differentiation (GO:0002761)
      negative regulation of type 2 immune response (GO:0002829)
      cellular iron ion homeostasis (GO:0006879)
      signal transduction (GO:0007165)
      negative regulation of gene expression (GO:0010629)
      positive regulation of protein ubiquitination (GO:0031398)
      negative regulation of transporter activity (GO:0032410)
      negative regulation of interleukin-4 production (GO:0032713)
      negative regulation of T cell proliferation (GO:0042130)
      positive regulation of I-kappaB kinase/NF-kappaB cascade (GO:0043123)
      ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (GO:0043162)
      regulation of lymphocyte differentiation (GO:0045619)
      positive regulation of protein catabolic process (GO:0045732)
      negative regulation of isotype switching to IgE isotypes (GO:0048294)
      regulation of isotype switching to IgG isotypes (GO:0048302)
      negative regulation of inflammatory response (GO:0050728)
      negative regulation of protein transport (GO:0051224)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014217
(v2.0)
Ndfip1NM_02299665113
159.98115.27625.379625.794636.376624.758659.07268.7291338.552822.4658
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013766
(v1.0)
Ndfip165113
Maternal RNA0.99146
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014217
(v2.0)
Ndfip165113
655/3790.2758464/3790.1753158/3792.3024481/3791.668645/379-1.0005285/379-1.0067
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014217
(v2.0)
Ndfip165113
312/1280.7679201/1280.5314153/1283.7372450/1283.120215/128-0.988469/128-1.4707
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014217
(v2.0)
Ndfip165113
60.210214242.4
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014217
(v2.0)
Ndfip165113
10.41638911.7
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013766
(v1.0)
Ndfip1NM_02299665113
119.82217.507119.191825.289741.477
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013766
(v1.0)
Ndfip1NM_02299665113
156.41320.59223.515434.266651.1549
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013766
(v1.0)
Ndfip1NM_02299665113
125.28558.506419.1006
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0013766
(v1.0)
Ndfip1NM_02299665113
122.29117.33136.47776
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013766
(v1.0)
Ndfip1NM_02299665113
66.889.27664
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0013766
(v1.0)
Ndfip1NM_02299665113
125.35857.7057.10458
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013766
(v1.0)
Ndfip1NM_02299665113
17.768624.418226.6331
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013766
(v1.0)
Ndfip1NM_02299665113
70.226593.127
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013766
(v1.0)
Ndfip1NM_02299665113
17.17764.64944
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013766
(v1.0)
Ndfip1NM_02299665113
24.371745.7411
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0013766
(v1.0)
8261H3062G06-3Mm.102496N4wbp5-pending65113
U018642NAP011965-001N4wbp5;TC918972,TC918971Q9EQH8U,F4.51834.14383.50613.60154.07023.85054.28
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013766
(v1.0)
1451493_atMm.102496Ndfip1NM_022996.165113
235.725259.025116.15219.55407.175
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013766
(v1.0)
A_51_P304879Ndfip1XM_12889365113
11P0.9290.593P
0013766
(v1.0)
A_52_P327095Ndfip1BC02637265113
11P0.8540.365P
0013766
(v1.0)
A_52_P380997Ndfip1XM_12889365113
11P0.5450.105P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0013766
(v1.0)
Ndfip165113
524647