DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013770
GeneNdnl2
SynonymsHCA4
Mageg1
NDNL2
Desc.necdin-like 2
LocusNM_023239 chr7:72016536-72017926(-)
DB links


Entrez 66647
MGI 1913897
Ensembl ENSMUSG00000070520
Vega OTTMUSG00000031051
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014221
(v2.0)
Ndnl2NM_02323966647
17.0369101.7127.80785.828764.946423.744910.9216116.39499.162723.926
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013770
(v1.0)
Ndnl266647
Maternal RNA0.9572
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014221
(v2.0)
Ndnl266647
772/4600.2337517/4600.0522123/4601.6722357/4600.9617144/4600.3792790/4600.1805
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014221
(v2.0)
Ndnl266647
350/1570.6405252/1570.5635115/1573.057318/1572.331135/157-0.1047199/157-0.2556
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014221
(v2.0)
Ndnl266647
73.205216045.75
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014221
(v2.0)
Ndnl266647
20.4710319.87
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013770
(v1.0)
Ndnl2NM_02323966647
105.69488.518163.90944.9367.72848
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013770
(v1.0)
Ndnl2NM_02323966647
126.36395.56971.410751.43378.8818
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013770
(v1.0)
Ndnl2NM_02323966647
110.5126.2305796.5751
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0013770
(v1.0)
Ndnl2NM_02323966647
107.87187.629386.4613
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013770
(v1.0)
Ndnl2NM_02323966647
97.045396.9338
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0013770
(v1.0)
Ndnl2NM_02323966647
110.5776.1452494.8278
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013770
(v1.0)
Ndnl2NM_02323966647
59.169843.387568.7631
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013770
(v1.0)
Ndnl2NM_02323966647
50.879280.5275
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013770
(v1.0)
Ndnl2NM_02323966647
17.006410.3661
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013770
(v1.0)
Ndnl2NM_02323966647
223.74112.762
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013770
(v1.0)
1422554_atMm.19944Ndnl2NM_023239.466647
279.375485.9188.150110.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013770
(v1.0)
A_51_P333869Ndnl2NM_02323966647
11P0.7140.185P
0013770
(v1.0)
A_52_P196721Ndnl2AK13115766647
11P1.4650.177P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0013770
(v1.0)
Ndnl266647
001001