DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013834
GeneNedd1
Synonyms
Desc.neural precursor cell expressed, developmentally down-regulated gene 1
LocusNM_008682 chr10:92147490-92185163(-)
DB links


Entrez 17997
MGI 97293
Ensembl ENSMUSG00000019988
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014285
(v2.0)
Nedd1NM_00868217997
4.7617188.3956193.0463.695268.456113.326214.4848132.46749.60111.7186
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013834
(v1.0)
Nedd117997
Minor ZGA0.95562
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014285
(v2.0)
Nedd117997
639/4110.1236460/4110.0462126/4111.8648358/4111.127385/411-0.2135578/411-0.1071
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014285
(v2.0)
Nedd117997
300/1750.2634191/1750.01120/1752.972244/1751.796114/175-1.5205143/175-0.8837
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014285
(v2.0)
Nedd117997
58.32799760.13
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014285
(v2.0)
Nedd117997
8.91384519.81
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013834
(v1.0)
Nedd1NM_00868217997
91.8693133.29247.423447.33710.2894
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013834
(v1.0)
Nedd1NM_00868217997
199.955260.254100.292103.3122.9438
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013834
(v1.0)
Nedd1NM_00868217997
96.05781.7414145.425
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0013834
(v1.0)
Nedd1NM_00868217997
93.7619131.95498.0075
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013834
(v1.0)
Nedd1NM_00868217997
446.188380.64
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0013834
(v1.0)
Nedd1NM_00868217997
96.11361.71755107.491
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013834
(v1.0)
Nedd1NM_00868217997
43.906745.705734.2481
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013834
(v1.0)
Nedd1NM_00868217997
151.33797.1206
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013834
(v1.0)
Nedd1NM_00868217997
37.579533.619
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013834
(v1.0)
Nedd1NM_00868217997
8.3619933.819
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0013834
(v1.0)
12827H3152H11-3Mm.2998Nedd117997
U032135NAP094659-001Nedd1;TC935171P33215U,F,24.04513.96713.20633.24042.91882.93322.9048
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013834
(v1.0)
1423196_atMm.2998Nedd1NM_008682.217997
174.4221228.725129.179.675
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013834
(v1.0)
A_51_P315634Nedd1NM_00868217997
11P0.7180.186P
Proteome N/A