DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013915
GeneNfu1
SynonymsCGI-33
Hirip5
Desc.NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)
LocusNM_001170591 chr6:86959830-86978455(+)
NM_020045 chr6:86959830-86978455(+)
DB links


Entrez 56748
MGI 1913290
Ensembl ENSMUSG00000029993
Vega OTTMUSG00000029692
Featureprotein-coding
GO(BP)
  •   1 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014370
(v2.0)
Nfu1NM_001170591,NM_02004556748
18.765243.563473.873414.341618.758610.54723.576487.835421.339415.5385
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013915
(v1.0)
Nfu156748
Minor ZGA0.98259
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014370
(v2.0)
Nfu156748
578/3990.0218357/399-0.275938/3990.203126/399-0.329328/399-1.7395292/399-1.0459
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014370
(v2.0)
Nfu156748
233/1570.0564140/157-0.279634/1571.3283106/1570.75527/157-2.274698/157-1.2663
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014370
(v2.0)
Nfu156748
87.565513664.39
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014370
(v2.0)
Nfu156748
35.39498044.24
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013915
(v1.0)
Nfu1NM_001170591,NM_02004556748
45.279751.12410.687513.042916.8153
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013915
(v1.0)
Nfu1FR197440,NM_001170591,NM_02004556748
38.382136.76387.9481611.290918.475
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013915
(v1.0)
Nfu1NM_001170591,NM_02004556748
47.34416.8627155.7774
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0013915
(v1.0)
Nfu1NM_001170591,NM_02004556748
46.212550.610765.147
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013915
(v1.0)
Nfu1FR197440,NM_001170591,NM_02004556748
37.327451.0616
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0013915
(v1.0)
Nfu1NM_001170591,NM_02004556748
47.37166.7687171.451
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013915
(v1.0)
Nfu1NM_001170591,NM_02004556748
9.8949712.593414.8336
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013915
(v1.0)
Nfu1FR197440,NM_001170591,NM_02004556748
11.168513.3684
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013915
(v1.0)
Nfu1NM_001170591,NM_02004556748
26.68884.25095
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013915
(v1.0)
Nfu1NM_001170591,NM_02004556748
49.164844.6096
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013915
(v1.0)
1418228_atMm.23809Nfu1NM_001170591.1,NM_020045.356748
647.625698.25523.725156.55598.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013915
(v1.0)
A_51_P347728Hirip5NM_02004556748
11P0.60.157P
0013915
(v1.0)
A_52_P368629Hirip5AK08195056748
11P0.3890.0671P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0013915
(v1.0)
Nfu156748
121121