DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013917
GeneNfxl1
SynonymsLOC381696
TCF9
Desc.nuclear transcription factor, X-box binding-like 1
LocusNM_133921 chr5:72904543-72950884(-)
DB links


Entrez 100978
MGI 1923646
Ensembl ENSMUSG00000072889
Vega OTTMUSG00000026056
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014372
(v2.0)
Nfxl1NM_133921100978
5.033872.2574105.19728.89889.09316.814797.7529183.73049.70835.98944
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013917
(v1.0)
Nfxl1100978
Minor ZGA0.97937
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014372
(v2.0)
Nfxl1100978
671/3340.4924429/3340.244396/3341.7658225/3340.756947/334-0.7588360/334-0.4895
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014372
(v2.0)
Nfxl1100978
352/1500.714224/1500.459791/1502.7836203/1501.750923/150-0.6256178/150-0.3498
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014372
(v2.0)
Nfxl1100978
55.15916333.84
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014372
(v2.0)
Nfxl1100978
12.598210711.77
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013917
(v1.0)
Nfxl1NM_133921100978
75.103673.174121.53356.295225.35588
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013917
(v1.0)
Nfxl1NM_133921100978
1815.483954.46446.568177.024171.749
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013917
(v1.0)
Nfxl1NM_133921100978
78.52771.8409179.8345
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0013917
(v1.0)
Nfxl1NM_133921100978
76.650872.439361.909
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013917
(v1.0)
Nfxl1NM_133921100978
1375.562143.57
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0013917
(v1.0)
Nfxl1NM_133921100978
78.57341.815767.8997
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013917
(v1.0)
Nfxl1NM_133921100978
19.93676.078286.74703
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013917
(v1.0)
Nfxl1NM_133921100978
51.112153.9576
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013917
(v1.0)
Nfxl1NM_133921100978
145.2467.3116
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013917
(v1.0)
Nfxl1NM_133921100978
96.6512108.822
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0013917
(v1.0)
6642H3029G02-3Mm.27827AW538212100978
U026288NAP007915-0011700012H24Rik;AW538212;TC893693,TC795586Q9DAE1U,F,24.2844.02453.11632.92962.25922.47172.723
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013917
(v1.0)
1417145_atMm.187453Nfxl1NM_133921.2100978
845.4251899.525466.17543.0587.975
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013917
(v1.0)
A_51_P149349Nfxl1BC022652100978
11P0.7340.199P
0013917
(v1.0)
A_51_P234539Nfxl1AK005913100978
11P0.4090.0782P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0013917
(v1.0)
Nfxl1100978
0.67210.6721