DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013918
GeneNfya
SynonymsCbf-b
Sez10
Desc.nuclear transcription factor-Y alpha
LocusNM_001110832 chr17:48526210-48549145(-)
NM_010913 chr17:48526210-48549145(-)
DB links


Entrez 18044
MGI 97316
Ensembl ENSMUSG00000023994
Vega OTTMUSG00000035112
Featureprotein-coding
GO(BP)
  •   4 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Antigen processing and presentation (mmu04612)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014373
(v2.0)
NfyaNM_001110832,NM_01091318044
18.4253240.0795.433527.006127.611513.887215.595102.71927.345513.1646
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013918
(v1.0)
Nfya18044
Maternal RNA0.98095
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014373
(v2.0)
Nfya18044
801/4230.4075484/4230.078689/4234.26621795/4233.408813/423-2.8735106/423-2.5789
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014373
(v2.0)
Nfya18044
472/1631.0166272/1630.6194658/1635.51291642/1634.64265/163-2.742452/163-2.215
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014373
(v2.0)
Nfya18044
55.73817931.14
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014373
(v2.0)
Nfya18044
14.129913410.54
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013918
(v1.0)
NfyaNM_001110832,NM_01091318044
249.57866.051320.10419.094111.0016
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013918
(v1.0)
NfyaNM_001110832,NM_01091318044
909.971311.16464.849354.069257.1725
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013918
(v1.0)
NfyaNM_001110832,NM_01091318044
260.9576.7378172.0634
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013918
(v1.0)
NfyaNM_001110832,NM_01091318044
604.3441008.24
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013918
(v1.0)
NfyaNM_001110832,NM_01091318044
18.613218.436118.9623
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013918
(v1.0)
NfyaNM_001110832,NM_01091318044
43.848746.8451
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013918
(v1.0)
NfyaNM_001110832,NM_01091318044
97.06316.4508
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013918
(v1.0)
NfyaNM_001110832,NM_01091318044
2.66226.99442
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0013918
(v1.0)
21118L0834A10-3Mm.4929Nfya18044
U037898NAP006651-001Nfya;TC942077P23708U,F3.80833.74433.33363.2943.35393.31543.256
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013918
(v1.0)
1422082_a_atMm.4929NfyaNM_001110832.1,NM_010913.218044
141.725222.075110.200
0013918
(v1.0)
1452560_a_atMm.4929NfyaNM_001110832.1,NM_010913.218044
885.651309.75286.3214133.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013918
(v1.0)
A_51_P514126NfyaNM_01091318044
11P0.4990.168P
0013918
(v1.0)
A_52_P550049NfyaAK00472918044
11P0.6910.18P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0013918
(v1.0)
Nfya18044
010010