DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013951
GeneNinj1
Synonyms
Desc.ninjurin 1
LocusNM_013610 chr13:49282916-49291620(+)
DB links


Entrez 18081
MGI 1196617
Ensembl ENSMUSG00000037966
Vega OTTMUSG00000027739
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014404
(v2.0)
Ninj1NM_01361018081
244.137210.249153.4124.54977.0721953.188919.2145229.96512.587866.5808
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013951
(v1.0)
Ninj118081
Maternal RNA0.97945
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014404
(v2.0)
Ninj118081
803/589-0.0656425/589-0.585890/5890.8773281/5890.2626157/5890.14931121/5890.3286
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014404
(v2.0)
Ninj118081
360/2050.2982196/205-0.1881/2052.1962221/2051.428698/2050.9787627/2051.01
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014404
(v2.0)
Ninj118081
82.188113262.26
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014404
(v2.0)
Ninj118081
25.78777136.32
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013951
(v1.0)
Ninj1NM_01361018081
218.602106.28618.27634.8938813.846
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013951
(v1.0)
Ninj1NM_01361018081
316.873138.40923.38966.2548919.6553
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013951
(v1.0)
Ninj1NM_01361018081
228.56989.2836115.961
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0013951
(v1.0)
Ninj1NM_01361018081
223.105105.219170.586
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013951
(v1.0)
Ninj1NM_01361018081
127.252203.056
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0013951
(v1.0)
Ninj1NM_01361018081
228.70188.0607187.093
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013951
(v1.0)
Ninj1NM_01361018081
16.9214.725248.79953
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013951
(v1.0)
Ninj1NM_01361018081
5.541210.2775
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013951
(v1.0)
Ninj1NM_01361018081
16.59576.78558
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013951
(v1.0)
Ninj1NM_01361018081
659.889393.251
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0013951
(v1.0)
8790H3072B10-3Mm.18503Ninj118081
U014818NAP011072-001Ninj1;TC819897O70131U,F,23.93683.75343.48313.38923.70363.50763.6585
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013951
(v1.0)
1448417_atMm.18503Ninj1NM_013610.218081
348.875594.25000
0013951
(v1.0)
1438928_x_atMm.18503Ninj1NM_013610.218081
2865.5754692.952422.7250442.675
0013951
(v1.0)
1441281_s_atMm.18503Ninj1NM_013610.218081
1519.551881.91122.42500
0013951
(v1.0)
1447549_x_atMm.18503Ninj1NM_013610.218081
1230.9751589.325000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013951
(v1.0)
A_51_P295046Ninj1NM_01361018081
11P1.1270.442P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0013951
(v1.0)
Ninj118081
564261410