DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014027
GeneNmd3
SynonymsC87860
Desc.NMD3 homolog (S. cerevisiae)
LocusNM_133787 chr3:69525977-69552968(+)
DB links


Entrez 97112
MGI 2140103
Ensembl ENSMUSG00000027787
Vega OTTMUSG00000029387
Featureprotein-coding
GO(BP)
GO(MF)
  •   1 Terms
GO(CC)
KEGG
  •   2 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014482
(v2.0)
Nmd3NM_13378797112
7.3403418.955511.484844.61743.656119.379714.13496.1859236.860422.705
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014027
(v1.0)
Nmd397112
Major ZGA0.99145
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014482
(v2.0)
Nmd397112
578/3390.2563450/3390.2917163/3392.5027336/3391.312148/339-0.7503347/339-0.5637
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014482
(v2.0)
Nmd397112
279/1710.1924178/171-0.058158/1713.3972318/1712.209818/171-1.1468101/171-1.3459
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014482
(v2.0)
Nmd397112
62.958315341.15
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014482
(v2.0)
Nmd397112
17.13299318.42
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014027
(v1.0)
Nmd3NM_13378797112
19.69377.9165433.215930.368110.0421
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014027
(v1.0)
Nmd3NM_13378797112
35.134213.253567.536159.501117.9346
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014027
(v1.0)
Nmd3NM_13378797112
20.59152.684448.63711
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014027
(v1.0)
Nmd3NM_13378797112
20.09947.837054.58386
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0014027
(v1.0)
Nmd3NM_13378797112
14.6957.43163
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014027
(v1.0)
Nmd3NM_13378797112
20.60352.647675.02742
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014027
(v1.0)
Nmd3NM_13378797112
30.752729.321625.4758
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014027
(v1.0)
Nmd3NM_13378797112
62.894750.9749
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014027
(v1.0)
Nmd3NM_13378797112
26.08496.8376
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014027
(v1.0)
Nmd3NM_13378797112
30.613739.8238
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014027
(v1.0)
1448133_atMm.21062Nmd3NM_133787.297112
254.625250.5389.475427.25236.525
0014027
(v1.0)
1437238_x_atMm.21062Nmd3NM_133787.297112
592.275638.8953.625940.225549.9
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014027
(v1.0)
A_51_P478311Nmd3NM_13378797112
11P1.1390.618P
Proteome N/A