DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014079
GeneNop56
Synonyms56kDa with KKE/D repeat
Nol5a
NOP56
Desc.NOP56 ribonucleoprotein
LocusNM_024193 chr2:130100148-130105049(+)
DB links


Entrez 67134
MGI 1914384
Ensembl ENSMUSG00000027405
Vega OTTMUSG00000015495
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Ribosome biogenesis in eukaryotes (mmu03008)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014535
(v2.0)
Nop56NM_02419367134
19.919378.150621.3568214.784287.27312.12185.298219.6448275.113379.17
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014079
(v1.0)
Nop5667134
Major ZGA0.98068
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014535
(v2.0)
Nop5667134
595/440-0.0773384/440-0.3118123/4401.7347325/4400.890457/440-0.8792370/440-0.8467
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014535
(v2.0)
Nop5667134
284/211-0.0838175/211-0.384117/2112.6819318/2111.910513/211-1.884197/211-1.705
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014535
(v2.0)
Nop5667134
82.218514357.5
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014535
(v2.0)
Nop5667134
34.11139436.29
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014079
(v1.0)
Nop56NM_02419367134
81.214314.8362159.947198.9861.499
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014079
(v1.0)
Nop56NM_024193,NR_02852867134
906.4831651.072722.663288.35476.78
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014079
(v1.0)
Nop56NM_02419367134
84.9177.2846816.1866
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014079
(v1.0)
Nop56NM_02419367134
82.887414.687314.5777
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0014079
(v1.0)
Nop56NM_024193,NR_02852867134
1669.833434.72
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014079
(v1.0)
Nop56NM_02419367134
84.96637.184915.9883
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014079
(v1.0)
Nop56NM_02419367134
148.086192.123190.202
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014079
(v1.0)
Nop56NM_024193,NR_02852867134
3487.486897.57
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014079
(v1.0)
Nop56NM_02419367134
29.7899410.842
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014079
(v1.0)
Nop56NM_02419367134
12.990118.3522
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014079
(v1.0)
4862G0110A02-3Mm.293632310044F10Rik67134
U002469NAP018139-001TC918927,TC918920,TC918919,TC918917,TC918916,TC918915,TC918914Q9D6Z1U,F,23.18023.2453.56233.90333.36343.80223.7541
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014079
(v1.0)
1426533_atMm.29363Nop56NM_024193.267134
272.475350.175413.025673.8626.25
0014079
(v1.0)
1455035_s_atMm.29363Nop56NM_024193.267134
112.962.075384.6706.575837.65
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014079
(v1.0)
A_51_P187902Nol5aNM_02419367134
11P0.9370.634P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0014079
(v1.0)
Nol5a67134
010010