DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014128
GeneNpm1
SynonymsB23
NO38
nucleolar protein NO38
Desc.nucleophosmin 1
LocusNM_001252260 chr11:33052498-33063206(-)
NM_008722 chr11:33052498-33063206(-)
NM_001252261 chr11:33054925-33063206(-)
DB links


Entrez 18148
MGI 106184
Ensembl ENSMUSG00000057113
Vega OTTMUSG00000005395
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014584
(v2.0)
Npm1NM_001252260,NM_001252261,NM_00872218148
163.911254.227546.855518.4981865.963910.42615.523481.4032189.674449.29
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014128
(v1.0)
Npm118148
MGA0.98028
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014584
(v2.0)
Npm118148
542/3500.1178360/350-0.0753100/3501.7589431/3501.6246105/3500.3174691/3500.381
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014584
(v2.0)
Npm118148
253/1700.0604132/170-0.477997/1702.7069396/1702.533715/170-1.3865107/170-1.2555
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014584
(v2.0)
Npm118148
53.832115634.51
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014584
(v2.0)
Npm118148
22.590212218.52
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014128
(v1.0)
Npm1NM_00872218148
297.691426.388435.7021443.55497.562
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014128
(v1.0)
Npm1NM_00872218148
24.303728.775343.173119.18550.5973
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014128
(v1.0)
Npm1NM_00872218148
311.26369.1586465.199
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014128
(v1.0)
Npm1NM_00872218148
303.824422.107405.65
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0014128
(v1.0)
Npm1NM_00872218148
29.19430.1958
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014128
(v1.0)
Npm1NM_00872218148
311.44468.2114444.903
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014128
(v1.0)
Npm1NM_00872218148
403.3921393.811695.56
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014128
(v1.0)
Npm1NM_00872218148
117.898115.189
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014128
(v1.0)
Npm1NM_00872218148
2507.771891.18
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014128
(v1.0)
Npm1NM_00872218148
257.736241.07
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014128
(v1.0)
1719C0246D03-3Mm.6343Npm118148
4.1164.34154.70024.48324.58444.834.6707
0014128
(v1.0)
18812L0228D03-3Mm.6343Npm118148
U032641NAP001314-002TC939955,TC939938,TC836409Q61937U,F,23.78253.7853.76574.14014.29254.30863.7786
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014128
(v1.0)
1415839_a_atMm.485384Npm1NM_008722.218148
3330.2254351.7753562.0511041.0255370.775
0014128
(v1.0)
1432416_a_atMm.485384Npm1NM_008722.218148
1596.9252746.7251865.87865.2253166.825
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014128
(v1.0)
A_51_P467410Npm1NM_00872218148
11P0.240.0444P
0014128
(v1.0)
A_52_P732583Npm1NM_00872218148
11P0.7930.259P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0014128
(v1.0)
Npm118148
13.5214.52.5