DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014265
GeneNub1
SynonymsBS4
NY-REN-18
Desc.negative regulator of ubiquitin-like proteins 1
LocusNM_016736 chr5:24191633-24216373(+)
DB links


Entrez 53312
MGI 1889001
Ensembl ENSMUSG00000028954
Featureprotein-coding
GO(BP)
  •   3 Terms
      ubiquitin-dependent protein catabolic process (GO:0006511)
      protein ubiquitination (GO:0016567)
      positive regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032436)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014727
(v2.0)
Nub1NM_01673653312
29.715454.501555.9352189.91342.63330.891727.798855.8849306.82637.0203
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014265
(v1.0)
Nub153312
MGA0.96684
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014727
(v2.0)
Nub153312
690/3800.347417/3800.0178296/3803.2002768/3802.338743/380-1.0684298/380-0.9465
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014727
(v2.0)
Nub153312
362/1380.8738202/1380.4308278/1384.4951715/1383.68056/138-2.286358/138-1.8231
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014727
(v2.0)
Nub153312
40.241111435.3
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014727
(v2.0)
Nub153312
12.49938315.06
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014265
(v1.0)
Nub1NM_01673653312
56.647438.8244141.335237.40319.4758
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014265
(v1.0)
Nub1NM_01673653312
93.111473.6466309.079575.45935.8289
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014265
(v1.0)
Nub1NM_01673653312
59.230110.867242.3582
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014265
(v1.0)
Nub1NM_01673653312
57.814438.434541.3445
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0014265
(v1.0)
Nub1NM_01673653312
159.475182.307
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014265
(v1.0)
Nub1NM_01673653312
59.264510.718445.3453
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014265
(v1.0)
Nub1NM_01673653312
130.854229.222211.883
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014265
(v1.0)
Nub1NM_01673653312
1296.631238.77
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014265
(v1.0)
Nub1NM_01673653312
61.402669.8356
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014265
(v1.0)
Nub1NM_01673653312
3.412130.996547
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014265
(v1.0)
7012H3040D04-3Mm.5856Nyren18-pending53312
U042617NAP002242-002Nyren18;TC936441,TC809585,TC809584,TC809582,TC809581P54729U,F,22.92653.15354.17834.65044.18254.29563.716
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014265
(v1.0)
1420535_a_atMm.5856Nub1NM_016736.253312
36.975090.0589.242.825
0014265
(v1.0)
1452776_a_atMm.5856Nub1NM_016736.253312
143.95113.85308.625408.9115.5
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014265
(v1.0)
A_52_P472326330412F12RikNM_01673653312
11P0.6070.207P
0014265
(v1.0)
A_52_P5823096330412F12RikNM_01673653312
11P0.06660.0234P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0014265
(v1.0)
Nub153312
330340