DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014275
GeneNudcd3
Synonyms
Desc.NudC domain containing 3
LocusNM_173748 chr11:6005695-6100454(-)
DB links


Entrez 209586
MGI 2144158
Ensembl ENSMUSG00000053838
Vega OTTMUSG00000005106
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014737
(v2.0)
Nudcd3NM_173748209586
18.465241.51382.664913.44910.445623.660621.366478.64549.0875622.2486
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014275
(v1.0)
Nudcd3209586
Minor ZGA0.99589
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014737
(v2.0)
Nudcd3209586
651/4370.0621428/437-0.1459400/4373.43751208/4372.791182/437-0.3523506/437-0.3868
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014737
(v2.0)
Nudcd3209586
346/2170.1596228/217-0.0447378/2174.32711042/2173.579624/217-1.0873135/217-1.2746
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014737
(v2.0)
Nudcd3209586
55.979414039.99
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014737
(v2.0)
Nudcd3209586
17.34329717.88
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014275
(v1.0)
Nudcd3NM_173748209586
43.153557.479910.027.2440715.1172
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014275
(v1.0)
Nudcd3FR176914,FR323714,FR398604,NM_173748209586
198.987265.0618.743322.076556.4481
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014275
(v1.0)
Nudcd3NM_173748209586
45.12096.7528962.7118
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014275
(v1.0)
Nudcd3NM_173748209586
44.042556.902858.2887
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0014275
(v1.0)
Nudcd3FR176914,FR323714,FR398604,NM_173748209586
269.094550.016
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014275
(v1.0)
Nudcd3NM_173748209586
45.14726.660463.9291
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014275
(v1.0)
Nudcd3NM_173748209586
9.276976.994436.24828
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014275
(v1.0)
Nudcd3FR176914,FR323714,FR398604,NM_173748209586
10.23689.51454
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014275
(v1.0)
Nudcd3NM_173748209586
34.79163.83553
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014275
(v1.0)
Nudcd3NM_173748209586
2.283624.02341
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014275
(v1.0)
8533H3067H03-3BC024322209586
U032482NAP000561-002TC868446U,F3.41533.32743.42353.26163.81633.51063.7439
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014275
(v1.0)
1460395_atMm.25321Nudcd3NM_173748.4209586
282.1238.45248.050124.5
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014275
(v1.0)
A_52_P105164Nudcd3NM_173748209586
11P0.5320.148P
Proteome N/A