DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014318
GeneNup54
Synonyms54kDa
Desc.nucleoporin 54
LocusNM_183392 chr5:92844566-92864225(-)
DB links


Entrez 269113
MGI 1920460
Ensembl ENSMUSG00000034826
Vega OTTMUSG00000028742
Featureprotein-coding
GO(BP)
GO(MF)
  •   1 Terms
      nucleocytoplasmic transporter activity (GO:0005487)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014781
(v2.0)
Nup54NM_183392269113
6.1826960.017461.097124.911128.339721.963218.313853.708127.019619.7353
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014318
(v1.0)
Nup54269113
Maternal RNA0.99633
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014781
(v2.0)
Nup54269113
689/3900.3075462/3900.1279104/3901.6638277/3900.833624/390-1.921152/390-1.9481
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014781
(v2.0)
Nup54269113
363/1590.6747194/1590.1698103/1592.8825269/1592.072612/159-1.591967/159-1.8229
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014781
(v2.0)
Nup54269113
72.837216045.52
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014781
(v2.0)
Nup54269113
18.618510118.43
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014318
(v1.0)
Nup54NM_183392269113
62.387442.245818.558719.726712.941
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014318
(v1.0)
Nup54FR052416,NM_183392269113
164.543111.16149.212563.06936.779
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014318
(v1.0)
Nup54NM_183392269113
65.23182.2610746.0911
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014318
(v1.0)
Nup54NM_183392269113
63.672741.821739.7489
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0014318
(v1.0)
Nup54FR052416,NM_183392269113
402.095339.567
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014318
(v1.0)
Nup54NM_183392269113
65.26972.230143.5952
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014318
(v1.0)
Nup54NM_183392269113
17.182419.046918.7195
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014318
(v1.0)
Nup54FR052416,NM_183392269113
152.044112.503
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014318
(v1.0)
Nup54NM_183392269113
36.973610.9711
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014318
(v1.0)
Nup54NM_183392269113
60.619764.4842
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014318
(v1.0)
1432539_a_atMm.275289Nup54NM_183392.2269113
81.1156.768.82500
0014318
(v1.0)
1433580_atMm.275289Nup54NM_183392.2269113
770.325879.55344.975266.825308.525
0014318
(v1.0)
1438951_x_atMm.275289Nup54NM_183392.2269113
1060.825735.85284.05193.225310.175
0014318
(v1.0)
1459651_s_atMm.275289Nup54NM_183392.2269113
5911.4755095.4252355.852143.9753437.725
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014318
(v1.0)
A_51_P428244Nup54NM_183392269113
11P1.2990.232P
0014318
(v1.0)
A_52_P131584Nup54AK014260269113
11P0.6280.223P
0014318
(v1.0)
A_52_P237669Nup54NM_183392269113
11P1.620.138P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0014318
(v1.0)
Nup54269113
010010