DBTMEE:0015575
| Gene | Opa1 |
| Synonyms | lilr3 |
| Description | optic atrophy 1 |
| Locus | NM_133752 UCSC: chr16:29579420-29654688(+) OLP: chr16:29579420-29654688(+)
NM_001199177 UCSC: chr16:29579420-29654688(+) OLP: chr16:29579420-29654688(+)
|
| DB links |
Entrez 74143
MGI 1921393
Ensembl ENSMUSG00000038084
Vega OTTMUSG00000031484
|
| Feature | protein-coding |
| GO_BP |
-
 10 Terms
|
| GO_MF |
-
4 Terms
|
| GO_CC |
-
8 Terms
|
| KEGG | |
| Ver2_FPKM |
see DBTMEE:2016041 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0015575
(v1.0) | Opa1 | NM_001199177,NM_133752 | 74143
| 18.634 | 25.0927 | 11.7511 | 8.25528 | 8.0466 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0015575
(v1.0) | Opa1 | NM_001199177,NM_133752 | 74143
| 19.4836 | 3.06577 | 27.3767 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0015575
(v1.0) | Opa1 | NM_001199177,NM_133752 | 74143
| 19.0179 | 24.8407 | 19.5686 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0015575
(v1.0) | Opa1 | NM_001199177,NM_133752 | 74143
| 19.4949 | 3.02378 | 21.4622 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0015575
(v1.0) | Opa1 | NM_001199177,NM_133752 | 74143
| 10.8797 | 7.97081 | 6.66832 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
|---|
0015575
(v1.0) | Opa1 | NM_001199177,NM_133752 | 74143
| 15.4071 | 13.6609 |
|
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0015575
(v1.0) | Opa1 | NM_001199177,NM_133752 | 74143
| 4.84728 | 6.65696 |
|
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0015575
(v1.0) | 2450 | C0324B04-3 | | | | U043512 | NAP037201-1 | Opa1; | TC895002 | P58281 | U,F,2 | 2.3884 | 2.5002 | 2.0057 | 2.4166 | 2.3133 | 2.2408 | 2.4432 |
0015575
(v1.0) | 11427 | H3115C07-3 | | AI847218 | 106269
| U043512 | NAP032245-1 | Opa1; | TC925657 | P58281 | U,F,2 | 3.705 | 3.7251 | 3.2214 | 3.0947 | 3.4002 | 3.1857 | 3.2172 |
0015575
(v1.0) | 19360 | L0266H12-3 | | Opa1 | 74143
| U043512 | NAP093625-001 | Opa1; | TC925661,TC925659,TC925657,TC925656 | P58281 | U,F,2 | 2.8023 | 3.1151 | 2.7548 | 2.7187 | 2.6041 | 2.9036 | 3.1075 |
|
| MOE430 |
| DBTMEE | Probe_ID | Unigene | Gene | RefSeq | Entrez | Oo | 1C | 2C | 8C | Blastocyst |
|---|
0015575
(v1.0) | 1449214_a_at | Mm.274285 | Opa1 | NM_001199177.1,NM_133752.3 | 74143
| 48.25 | 36.625 | 44.575 | 0 | 92.25 |
0015575
(v1.0) | 1434890_at | Mm.274285 | Opa1 | NM_001199177.1,NM_133752.3 | 74143
| 1473.88 | 1516.5 | 1057.1 | 0 | 1151.68 |
|
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0015575
(v1.0) | A_51_P254864 | Opa1 | AK122311 | 74143
| 1 | 1 | P | 1.188 | 0.337 | P |
0015575
(v1.0) | A_52_P242724 | Opa1 | AK122311 | 74143
| 1 | 1 | P | 0.474 | 0.085 | P |
|
| Proteome |
| DBTMEE | Gene | Entrez | GV_seqCount | MII_seqCount | Zygote_seqCount | GV_specCount | MII_specCount | Zygote_specCount |
|---|
0015575
(v1.0) | Opa1 | 74143
| 10 | 24 | 3 | 22 | 46 | 6 |
|
