DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015575
GeneOpa1
Synonymslilr3
Desc.optic atrophy 1
LocusNM_133752 chr16:29579420-29654688(+)
NM_001199177 chr16:29579420-29654688(+)
DB links


Entrez 74143
MGI 1921393
Ensembl ENSMUSG00000038084
Vega OTTMUSG00000031484
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016041
(v2.0)
Opa1NM_001199177,NM_13375274143
8.3829217.932536.337215.789311.92196.9721511.42126.46249.63125.78918
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015575
(v1.0)
Opa174143
Minor ZGA0.90393
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016041
(v2.0)
Opa174143
478/2720.2996359/2720.2832117/2722.3333268/2721.302179/2721.4403677/2720.7141
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016041
(v2.0)
Opa174143
252/1500.2342173/1500.089116/1503.1304241/1501.997360/1500.7202186/150-0.2869
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016041
(v2.0)
Opa174143
40.81349941.23
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016041
(v2.0)
Opa174143
13.13767018.77
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
18.63425.092711.75118.255288.0466
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
612.026512.46341.986579.83194.72
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
19.48363.0657727.3767
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
19.017924.840719.5686
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
2020.391098.37
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
19.49493.0237821.4622
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
10.87977.970816.66832
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
1069.07697.633
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
15.407113.6609
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015575
(v1.0)
Opa1NM_001199177,NM_13375274143
4.847286.65696
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015575
(v1.0)
2450C0324B04-3U043512NAP037201-1Opa1;TC895002P58281U,F,22.38842.50022.00572.41662.31332.24082.4432
0015575
(v1.0)
11427H3115C07-3AI847218106269
U043512NAP032245-1Opa1;TC925657P58281U,F,23.7053.72513.22143.09473.40023.18573.2172
0015575
(v1.0)
19360L0266H12-3Opa174143
U043512NAP093625-001Opa1;TC925661,TC925659,TC925657,TC925656P58281U,F,22.80233.11512.75482.71872.60412.90363.1075
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015575
(v1.0)
1449214_a_atMm.274285Opa1NM_001199177.1,NM_133752.374143
48.2536.62544.575092.25
0015575
(v1.0)
1434890_atMm.274285Opa1NM_001199177.1,NM_133752.374143
1473.8751516.51057.101151.675
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015575
(v1.0)
A_51_P254864Opa1AK12231174143
11P1.1880.337P
0015575
(v1.0)
A_52_P242724Opa1AK12231174143
11P0.4740.085P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015575
(v1.0)
Opa174143
1024322466