DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015723
GenePaf1
Synonyms
Desc.Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
LocusNM_019458 chr7:29178015-29184402(+)
DB links


Entrez 54624
MGI 1923988
Ensembl ENSMUSG00000003437
Vega OTTMUSG00000023577
Featureprotein-coding
GO(BP)
  •   15 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      endodermal cell fate commitment (GO:0001711)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      mRNA polyadenylation (GO:0006378)
      histone monoubiquitination (GO:0010390)
      Wnt receptor signaling pathway (GO:0016055)
      stem cell maintenance (GO:0019827)
      positive regulation of mRNA 3'-end processing (GO:0031442)
      positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
      histone H2B ubiquitination (GO:0033523)
      negative regulation of myeloid cell differentiation (GO:0045638)
      negative regulation of S phase of mitotic cell cycle (GO:0045749)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      cellular response to lipopolysaccharide (GO:0071222)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016190
(v2.0)
Paf1NM_01945854624
27.179533.64119.7224267.780646.392321.837712.662110.643235.054723.6334
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015723
(v1.0)
Paf154624
Major ZGA0.88839
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016190
(v2.0)
Paf154624
661/4340.0939375/434-0.3262177/4342.2755591/4341.770810/434-3.258196/434-2.7567
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016190
(v2.0)
Paf154624
298/1700.2954160/170-0.2024151/1703.3401467/1702.77114/170-3.064642/170-2.5738
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016190
(v2.0)
Paf154624
67.748914447.05
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016190
(v2.0)
Paf154624
21.60389522.74
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015723
(v1.0)
Paf1NM_01945854624
34.96776.739550.447532.09898.9373
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015723
(v1.0)
Paf1NM_01945854624
482.0335.1808396.572344.165132.33
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015723
(v1.0)
Paf1NM_01945854624
36.5629.939817.35294
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015723
(v1.0)
Paf1NM_01945854624
35.68816.671837.90227
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015723
(v1.0)
Paf1NM_01945854624
36.695947.6203
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015723
(v1.0)
Paf1NM_01945854624
36.58329.803668.66694
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015723
(v1.0)
Paf1NM_01945854624
46.706530.992724.32
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015723
(v1.0)
Paf1NM_01945854624
48.066733.3154
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015723
(v1.0)
Paf1NM_01945854624
58.929949.4702
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015723
(v1.0)
Paf1NM_01945854624
5.203322.56133
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015723
(v1.0)
14418J0502E06-3Mm.79165730511K23Rik54624
2.39762.60242.53122.61672.37352.51122.4241
0015723
(v1.0)
14944J0916G12-3Mm.79165730511K23Rik54624
U007873NAP009422-0015730511K23Rik;TC864093,TC864092Q9CS63U,F,23.40093.55393.83774.25183.62163.79513.6543
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015723
(v1.0)
1416874_a_atMm.7916Paf1NM_019458.354624
105.52565.25107.1590.17571.725
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015723
(v1.0)
A_51_P1839955730511K23RikNM_01945854624
11P0.9760.846P
0015723
(v1.0)
A_52_P69445730511K23RikNM_01945854624
11P0.8710.499P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015723
(v1.0)
Paf154624
020030