DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015723
GenePaf1
Synonyms
DescriptionPaf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
LocusNM_019458 UCSC: chr7:29178015-29184402(+) OLP: chr7:29178015-29184402(+)
DB links


Entrez 54624
MGI 1923988
Ensembl ENSMUSG00000003437
Vega OTTMUSG00000023577
Featureprotein-coding
GO_BP
  •   15 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      endodermal cell fate commitment (GO:0001711)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      mRNA polyadenylation (GO:0006378)
      histone monoubiquitination (GO:0010390)
      Wnt receptor signaling pathway (GO:0016055)
      stem cell maintenance (GO:0019827)
      positive regulation of mRNA 3'-end processing (GO:0031442)
      positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
      histone H2B ubiquitination (GO:0033523)
      negative regulation of myeloid cell differentiation (GO:0045638)
      negative regulation of S phase of mitotic cell cycle (GO:0045749)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      cellular response to lipopolysaccharide (GO:0071222)
GO_MF
GO_CC
KEGG
Ver2_FPKM see DBTMEE:2016190 (v2.0)
SPR_Histone_Erkek_5KaroundTSS N/A
SPR_Histone_Erkek_2KaroundTSS N/A
SPR_Methy_Kobayashi_5KaroundTSS N/A
SPR_Methy_Kobayashi_2KaroundTSS N/A
SOLiD_OocyteTo4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015723
(v1.0)		Paf1NM_01945854624
34.96776.739550.447532.09898.9373
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015723
(v1.0)		Paf1NM_01945854624
36.5629.939817.35294
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015723
(v1.0)		Paf1NM_01945854624
35.68816.671837.90227
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015723
(v1.0)		Paf1NM_01945854624
36.58329.803668.66694
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015723
(v1.0)		Paf1NM_01945854624
46.706530.992724.32
Illumina_Oo_2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015723
(v1.0)		Paf1NM_01945854624
58.929949.4702
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015723
(v1.0)		Paf1NM_01945854624
5.203322.56133
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015723
(v1.0)		14418J0502E06-3Mm.79165730511K23Rik54624
2.39762.60242.53122.61672.37352.51122.4241
0015723
(v1.0)		14944J0916G12-3Mm.79165730511K23Rik54624
U007873NAP009422-0015730511K23Rik;TC864093,TC864092Q9CS63U,F,23.40093.55393.83774.25183.62163.79513.6543
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015723
(v1.0)		1416874_a_atMm.7916Paf1NM_019458.354624
105.52565.25107.1590.17571.725
Agilent44K
DBTMEEProbe_IDGeneAccEntrezOo1_xFoldOo1_pValOo1_FlagOo2_xFoldOo2_pValOo2_Flag
0015723
(v1.0)		A_51_P1839955730511K23RikNM_01945854624
11P0.9760.846P
0015723
(v1.0)		A_52_P69445730511K23RikNM_01945854624
11P0.8710.499P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015723
(v1.0)		Paf154624
020030