DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015811
GenePatl1
SynonymsPat1b
Desc.protein associated with topoisomerase II homolog 1 (yeast)
LocusNM_172635 chr19:11986889-12019586(+)
DB links


Entrez 225929
MGI 2147679
Ensembl ENSMUSG00000046139
Featureprotein-coding
GO(BP)
  •   3 Terms
      deadenylation-dependent decapping of nuclear-transcribed mRNA (GO:0000290)
      negative regulation of translation (GO:0017148)
      cytoplasmic mRNA processing body assembly (GO:0033962)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016279
(v2.0)
Patl1NM_172635225929
6.999366.2879914.12895.889597.73447.663815.7184515.84856.975017.50414
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015811
(v1.0)
Patl1225929
1-Cell Transient0.98191
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016279
(v2.0)
Patl1225929
718/3850.3854496/3850.2487138/3852.0865347/3851.176165/385-0.5021306/385-0.9273
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016279
(v2.0)
Patl1225929
372/1550.7465226/1550.4255134/1553.293332/1552.411315/155-1.256678/155-1.5716
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016279
(v2.0)
Patl1225929
37.511411133.79
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016279
(v2.0)
Patl1225929
6.4779788.3
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015811
(v1.0)
Patl1NM_172635225929
6.537129.699184.375685.370383.99086
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015811
(v1.0)
Patl1NM_172635225929
20.420220.76415.26886.506614.8645
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015811
(v1.0)
Patl1NM_172635225929
6.835162.5597410.582
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015811
(v1.0)
Patl1NM_172635225929
6.671799.6017911.709
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015811
(v1.0)
Patl1NM_172635225929
15.986622.706
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015811
(v1.0)
Patl1NM_172635225929
6.839132.5246812.842
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015811
(v1.0)
Patl1NM_172635225929
4.05125.185314.80136
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015811
(v1.0)
Patl1NM_172635225929
6.436216.26327
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015811
(v1.0)
Patl1NM_172635225929
20.97058.04221
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015811
(v1.0)
Patl1NM_172635225929
7.529648.6171
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015811
(v1.0)
16620K0436D07-3Mm.42711D430024J04225929
U019184NAP009183-001D430024J04;TC926786,TC926785U,F3.43343.32413.63193.50673.43613.49833.3608
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015811
(v1.0)
1433697_atMm.42711Patl1NM_172635.3225929
658.425707.55591.375643.05822.8
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015811
(v1.0)
A_51_P507280AV312086NM_172635225929
11P1.2510.269P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015811
(v1.0)
Patl1225929
020030