DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015919
GenePcgf1
SynonymsNspc1
Desc.polycomb group ring finger 1
LocusNM_197992 chr6:83028384-83030849(+)
DB links


Entrez 69837
MGI 1917087
Ensembl ENSMUSG00000069678
Vega OTTMUSG00000039809
Featureprotein-coding
GO(BP)
  •   3 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016390
(v2.0)
Pcgf1NM_19799269837
9.65571838.216445.145172.616123.4742.072715.68420.353161.18448.3149
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015919
(v1.0)
Pcgf169837
Maternal RNA0.9614
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016390
(v2.0)
Pcgf169837
690/4770.0197415/477-0.3163204/4772.3465465/4771.29228/4770.98661382/4770.9339
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016390
(v2.0)
Pcgf169837
352/1890.3826210/1890.0356188/1893.5113383/1892.334962/1890.4414326/1890.1862
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016390
(v2.0)
Pcgf169837
73.29517541.88
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016390
(v2.0)
Pcgf169837
25.001912220.49
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015919
(v1.0)
Pcgf1NM_19799269837
871.567308.535128.76385.940411.1902
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015919
(v1.0)
Pcgf1NM_19799269837
3085.16939.676473.422742.03275.3708
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015919
(v1.0)
Pcgf1NM_19799269837
911.3033.53119336.618
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015919
(v1.0)
Pcgf1NM_19799269837
889.522305.437311.641
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015919
(v1.0)
Pcgf1NM_19799269837
1463.5772.516
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015919
(v1.0)
Pcgf1NM_19799269837
911.8333.48283341.798
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015919
(v1.0)
Pcgf1NM_19799269837
119.21582.9788111.714
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015919
(v1.0)
Pcgf1NM_19799269837
1006.85739.177
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015919
(v1.0)
Pcgf1NM_19799269837
707.459307.626
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015919
(v1.0)
Pcgf1NM_19799269837
1046.36590.649
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015919
(v1.0)
8700H3070F05-3Mm.12261Nspc169837
U007072NAP098155-001Nspc1;TC849283,TC8492823.84313.89173.58033.71983.66233.43573.5401
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015919
(v1.0)
1427956_atMm.12261Pcgf1NM_197992.169837
914.51312.4179.1500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015919
(v1.0)
A_51_P216211Pcgf1NM_19799269837
11P0.8260.307P
Proteome N/A