DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015921
GenePcgf3
SynonymsDONG1
Rnf3
RNF3A
Desc.polycomb group ring finger 3
LocusNM_172716 chr5:108890351-108932118(+)
DB links


Entrez 69587
MGI 1916837
Ensembl ENSMUSG00000033623
Vega OTTMUSG00000017424
Featureprotein-coding
GO(BP)
  •   2 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016392
(v2.0)
Pcgf3NM_17271669587
4.5227716.28931.953816.884921.41997.7933423.906531.286414.26427.41255
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015921
(v1.0)
Pcgf369587
1-Cell Transient0.93716
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016392
(v2.0)
Pcgf369587
656/4490.0341449/449-0.1159101/4491.4244271/4490.6001131/4490.2783767/4490.1728
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016392
(v2.0)
Pcgf369587
350/1990.3004184/199-0.22893/1992.4336246/1991.624937/199-0.3608218/199-0.465
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016392
(v2.0)
Pcgf369587
29.81947340.85
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016392
(v2.0)
Pcgf369587
8.06784816.81
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015921
(v1.0)
Pcgf3NM_17271669587
16.931722.080712.57314.840716.7413
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015921
(v1.0)
Pcgf3NM_17271669587
1446.13834.1821379.55568.145742.914
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015921
(v1.0)
Pcgf3NM_17271669587
17.70361.6540224.0906
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015921
(v1.0)
Pcgf3NM_17271669587
17.280521.85923.1286
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015921
(v1.0)
Pcgf3NM_17271669587
247.369310.172
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015921
(v1.0)
Pcgf3NM_17271669587
17.71391.6313725.3667
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015921
(v1.0)
Pcgf3NM_17271669587
11.640614.32939.87154
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015921
(v1.0)
Pcgf3NM_17271669587
40.557623.8999
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015921
(v1.0)
Pcgf3NM_17271669587
14.86547.40105
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015921
(v1.0)
Pcgf3NM_17271669587
0.4450810.33682
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015921
(v1.0)
13103H3158B10-3Mm.1532982310035N15Rik69587
U005952NAP024170-001TC920856,TC920855U,F,22.49552.73312.68232.6182.33392.46692.5095
0015921
(v1.0)
14567J0717B05-3Mm.1532982310035N15Rik69587
U005952NAP036241-1TC854467U,F,23.54133.55163.59693.51543.43613.55233.4476
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015921
(v1.0)
1428423_atMm.261218Pcgf3NM_172716.469587
693.951005.125670.825839.31502.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015921
(v1.0)
A_51_P182456Pcgf3AK00963869587
11P0.4310.152P
0015921
(v1.0)
A_52_P373846Pcgf3NM_17271669587
11P0.6040.226P
Proteome N/A