DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015968
GenePdcd4
SynonymsD19Ucla1
MA-3
TIS
Desc.programmed cell death 4
LocusNM_011050 chr19:53966721-54004351(+)
NM_001168491 chr19:53977841-54004351(+)
NM_001168492 chr19:53977841-54004351(+)
DB links


Entrez 18569
MGI 107490
Ensembl ENSMUSG00000024975
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016441
(v2.0)
Pdcd4NM_001168491,NM_001168492,NM_01105018569
27.601629.561545.274116.54249.6052610.236715.371630.899911.14719.79185
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015968
(v1.0)
Pdcd418569
Minor ZGA0.99377
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016441
(v2.0)
Pdcd418569
728/4830.0789504/483-0.0547237/4832.5442743/4831.947145/483-1.3469281/483-1.376
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016441
(v2.0)
Pdcd418569
378/1860.508278/1860.4615202/1863.6361574/1862.94026/186-2.70668/186-2.027
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016441
(v2.0)
Pdcd418569
107.525211593.5
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016441
(v2.0)
Pdcd418569
37.6514094.13
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015968
(v1.0)
Pdcd4NM_001168491,NM_001168492,NM_01105018569
30.726131.332912.30956.6506710.6551
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015968
(v1.0)
Pdcd4FR381676,NM_001168491,NM_001168492,NM_01105018569
152.898130.4655.328941.233458.3186
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015968
(v1.0)
Pdcd4NM_001168491,NM_001168492,NM_01105018569
32.126910.094234.1848
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015968
(v1.0)
Pdcd4NM_001168491,NM_001168492,NM_01105018569
31.35931.018222.8972
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015968
(v1.0)
Pdcd4FR381676,NM_001168491,NM_001168492,NM_01105018569
150.14292.5141
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015968
(v1.0)
Pdcd4NM_001168491,NM_001168492,NM_01105018569
32.14569.9559425.1128
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015968
(v1.0)
Pdcd4NM_001168491,NM_001168492,NM_01105018569
11.39676.421497.7339
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015968
(v1.0)
Pdcd4FR381676,NM_001168491,NM_001168492,NM_01105018569
45.819549.9058
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015968
(v1.0)
Pdcd4NM_001168491,NM_001168492,NM_01105018569
182.7343.46322
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015968
(v1.0)
Pdcd4NM_001168491,NM_001168492,NM_01105018569
1.564644.84979
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015968
(v1.0)
5656H3004G02-3Mm.1962522310002J21Rik66360
U039156NAP120827-0014930560M04Rik;Pdcd4;TC799592P972963.40393.58873.91033.63793.32693.57693.2895
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015968
(v1.0)
1418840_atMm.1605Pdcd4NM_011050.4,NM_001168491.1,NM_001168492.118569
239.875369.225287.85104.825263.825
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015968
(v1.0)
Pdcd418569
100100