DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015969
GenePdcd5
SynonymsTfar19
Desc.programmed cell death 5
LocusNM_019746 chr7:36427004-36432501(-)
DB links


Entrez 56330
MGI 1913538
Ensembl ENSMUSG00000030417
Vega OTTMUSG00000029735
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016442
(v2.0)
Pdcd5NM_01974656330
96.466277.788716.113518.851228.144436.068123.11722.3133.97537.0517
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015969
(v1.0)
Pdcd556330
Maternal RNA0.98023
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016442
(v2.0)
Pdcd556330
739/5060.0336491/506-0.1593140/5061.7234370/5060.876492/506-0.3979757/506-0.0182
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016442
(v2.0)
Pdcd556330
352/1830.4289231/1830.2187134/1833.0696301/1832.034323/183-0.9054157/183-0.8144
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016442
(v2.0)
Pdcd556330
89.277914063.77
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016442
(v2.0)
Pdcd556330
19.8986729.7
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015969
(v1.0)
Pdcd5NM_01974656330
80.863311.135614.054219.550616.4396
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015969
(v1.0)
Pdcd5NM_01974656330
2.83050.1943670.2340680.2674960.905947
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015969
(v1.0)
Pdcd5NM_01974656330
84.5535.278712.1491
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015969
(v1.0)
Pdcd5NM_01974656330
82.529211.023816.5354
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015969
(v1.0)
Pdcd5NM_01974656330
0.1972741.18749
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015969
(v1.0)
Pdcd5NM_01974656330
84.599134.795518.1355
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015969
(v1.0)
Pdcd5NM_01974656330
13.01218.876923.5828
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015969
(v1.0)
Pdcd5NM_01974656330
0.2646010.80915
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015969
(v1.0)
Pdcd5NM_01974656330
44.234954.6741
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015969
(v1.0)
Pdcd5NM_01974656330
1.428982.5806
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015969
(v1.0)
5661H3004H01-3Mm.21650Pdcd556330
U028441NAP097325-001TC875464,TC875461P568122.73522.96942.87823.00362.89833.29293.2326
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015969
(v1.0)
1450638_atMm.371609Pdcd5NM_019746.456330
1605.925268.425365.975637.8251275.125
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015969
(v1.0)
A_51_P178435Pdcd5NM_01974656330
11P0.2270.0467P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015969
(v1.0)
Pdcd556330
34451411