DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015971
GenePdcd6ip
SynonymsAIP1
Alix
Desc.programmed cell death 6 interacting protein
LocusNM_011052 chr9:113560862-113617377(-)
NM_001164678 chr9:113560862-113617377(-)
NM_001164677 chr9:113560862-113617377(-)
DB links


Entrez 18571
MGI 1333753
Ensembl ENSMUSG00000032504
Vega OTTMUSG00000026168
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016444
(v2.0)
Pdcd6ipNM_001164677,NM_001164678,NM_01105218571
28.832927.745736.957526.697516.25239.393626.081135.511517.19988.36605
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015971
(v1.0)
Pdcd6ip18571
Minor ZGA0.94894
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016444
(v2.0)
Pdcd6ip18571
795/4790.2177591/4790.18661000/4794.62832693/4793.8154101/479-0.1862588/479-0.3029
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016444
(v2.0)
Pdcd6ip18571
409/1760.7006300/1760.6502803/1765.69652008/1764.823640/176-0.0778154/176-0.786
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016444
(v2.0)
Pdcd6ip18571
70.26415744.75
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016444
(v2.0)
Pdcd6ip18571
32.15969633.5
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015971
(v1.0)
Pdcd6ipNM_001164677,NM_001164678,NM_01105218571
28.843225.566519.855911.310417.9573
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015971
(v1.0)
Pdcd6ipFR144562,NM_001164677,NM_001164678,NM_01105218571
163.264140.625105.77266.449796.0624
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015971
(v1.0)
Pdcd6ipNM_001164677,NM_001164678,NM_01105218571
30.158210.544527.8936
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015971
(v1.0)
Pdcd6ipNM_001164677,NM_001164678,NM_01105218571
29.437425.309826.3048
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015971
(v1.0)
Pdcd6ipNM_001164677,NM_001164678,NM_01105218571
30.175710.400128.8502
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015971
(v1.0)
Pdcd6ipNM_001164677,NM_001164678,NM_01105218571
18.383410.920711.9153
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015971
(v1.0)
Pdcd6ipFR144562,NM_001164677,NM_001164678,NM_01105218571
273.121330.138
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015971
(v1.0)
Pdcd6ipNM_001164677,NM_001164678,NM_01105218571
19.761917.368
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015971
(v1.0)
Pdcd6ipNM_001164677,NM_001164678,NM_01105218571
6.954319.35824
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015971
(v1.0)
1210C0186D07-3Mm.199723AW544830102777
U031387NAP121895-001Pdcd6ip;TC891872O88695U,F,23.27183.24362.73632.63082.19892.39622.5823
0015971
(v1.0)
5860H3010F07-3Mm.29816Pdcd6ip18571
U031387NAP031830-1Pdcd6ip;TC927132,TC891872,TC891871O88695U,F,22.99723.08882.7822.84782.8223.07743.2023
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015971
(v1.0)
1449674_s_atMm.29816Pdcd6ipNM_001164677.1,NM_001164678.1,NM_011052.218571
169.1123.42551.6587.175155.7
0015971
(v1.0)
1415937_s_atMm.29816Pdcd6ipNM_001164677.1,NM_001164678.1,NM_011052.218571
60.17584.82564.075050.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015971
(v1.0)
A_52_P142761Pdcd6ipAK08654018571
11P0.8650.528P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015971
(v1.0)
Pdcd6ip18571
2847178211132