DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015995
GenePde6d
Synonyms
Desc.phosphodiesterase 6D, cGMP-specific, rod, delta
LocusNM_008801 chr1:88439590-88479076(-)
DB links


Entrez 18582
MGI 1270843
Ensembl ENSMUSG00000026239
Vega OTTMUSG00000021876
Featureprotein-coding
GO(BP)
GO(MF)
  •   4 Terms
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016468
(v2.0)
Pde6dNM_00880118582
18.503178.154110.71612.67675.0124819.115416.9758121.3736.5517220.9895
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015995
(v1.0)
Pde6d18582
Maternal RNA0.96857
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016468
(v2.0)
Pde6d18582
648/3610.3304457/3610.2234154/3612.3336419/3611.539748/361-0.8399236/361-1.2073
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016468
(v2.0)
Pde6d18582
312/1530.5124223/1530.424993/1532.7882219/1531.831715/153-1.2383106/153-1.1177
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016468
(v2.0)
Pde6d18582
43.738413532.4
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016468
(v2.0)
Pde6d18582
13.29325623.74
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015995
(v1.0)
Pde6dNM_00880118582
185.24976.84099.447683.4606412.2211
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015995
(v1.0)
Pde6dNM_00880118582
229.56588.726411.6324.2862115.1159
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015995
(v1.0)
Pde6dNM_00880118582
193.6956.7667483.8351
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015995
(v1.0)
Pde6dNM_00880118582
189.06576.069390.0131
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015995
(v1.0)
Pde6dNM_00880118582
90.0899106.508
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015995
(v1.0)
Pde6dNM_00880118582
193.8076.6740698.7233
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015995
(v1.0)
Pde6dNM_00880118582
8.747083.341394.5918
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015995
(v1.0)
Pde6dNM_00880118582
4.240015.825
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015995
(v1.0)
Pde6dNM_00880118582
291.46619.4168
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015995
(v1.0)
Pde6dNM_00880118582
2.8246212.0845
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015995
(v1.0)
10575H3100C01-3Mm.12925Pde6d18582
Pde6d3.55753.55583.62243.47533.69363.55943.6143
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015995
(v1.0)
1416843_atMm.12925Pde6dNM_008801.218582
911.6342.1106.275082.575
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015995
(v1.0)
A_51_P488092Pde6dNM_00880118582
11P0.7270.307P
Proteome N/A