DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016026
GenePdlim1
SynonymsmClim1
Desc.PDZ and LIM domain 1 (elfin)
LocusNM_016861 chr19:40296729-40346106(-)
DB links


Entrez 54132
MGI 1860611
Ensembl ENSMUSG00000055044
Featureprotein-coding
GO(BP)
  •   1 Terms
      regulation of transcription, DNA-dependent (GO:0006355)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016499
(v2.0)
Pdlim1NM_01686154132
70.529929.334469.07228.0251414.694862.327412.210299.952715.091874.9411
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016026
(v1.0)
Pdlim154132
Minor ZGA0.9566
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016499
(v2.0)
Pdlim154132
716/4750.0791485/475-0.086124/4751.6387576/4751.6043384/4751.74211592/4751.1438
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016499
(v2.0)
Pdlim154132
391/2190.3221262/2190.1418104/2192.4627451/2192.3602215/2192.0107958/2191.5255
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016499
(v2.0)
Pdlim154132
45.358216228
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016499
(v2.0)
Pdlim154132
9.65059410.27
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016026
(v1.0)
Pdlim1NM_01686154132
30.491347.56365.9674610.19888.6832
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016026
(v1.0)
Pdlim1NM_01686154132
15.458323.22421.912843.399053.85125
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016026
(v1.0)
Pdlim1NM_01686154132
31.881525.793551.8929
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016026
(v1.0)
Pdlim1NM_01686154132
31.119547.08673.936
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016026
(v1.0)
Pdlim1NM_01686154132
20.315184.5584
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016026
(v1.0)
Pdlim1NM_01686154132
31.925.440281.0905
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016026
(v1.0)
Pdlim1NM_01686154132
5.524949.8473310.4627
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016026
(v1.0)
Pdlim1NM_01686154132
3.362392.94063
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016026
(v1.0)
Pdlim1NM_01686154132
67.778231.7865
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016026
(v1.0)
Pdlim1NM_01686154132
102.48158.6009
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016026
(v1.0)
6063H3015E11-3Mm.5567Pdlim154132
U039018NAP096235-001Pdlim1;elfin;TC858332O70400U,F,23.06483.00422.35842.4942.54252.58412.5374
0016026
(v1.0)
10821H3104A10-3Mm.18086U039018NAP096235-001Pdlim1;elfin;TC858332O70400U,F,22.59332.42242.29382.2972.39942.35712.422
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016026
(v1.0)
1416554_atMm.5567Pdlim1NM_016861.454132
433.575901267.95536.95640.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016026
(v1.0)
A_51_P461138Pdlim1NM_01686154132
11P1.2460.271P
0016026
(v1.0)
A_52_P283426Pdlim1AK07628554132
11P1.2560.287P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016026
(v1.0)
Pdlim154132
135145