DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016030
GenePdlim5
SynonymsEnh
Enh2
Enh3
Desc.PDZ and LIM domain 5
LocusNM_001190855 chr3:141902549-142058660(-)
NM_001190854 chr3:141902549-142058660(-)
NM_001190852 chr3:141902549-142058660(-)
NM_019808 chr3:141902549-142058660(-)
NM_001190856 chr3:141902549-142058660(-)
NM_001190853 chr3:141965044-142058660(-)
NM_022554 chr3:141965044-142054814(-)
NM_019809 chr3:141965044-142058660(-)
NM_001190857 chr3:141965044-142054814(-)
DB links


Entrez 56376
MGI 1927489
Ensembl ENSMUSG00000028273
Featureprotein-coding
GO(BP)
  •   2 Terms
      regulation of synapse assembly (GO:0051963)
      regulation of dendritic spine morphogenesis (GO:0061001)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016503
(v2.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
10.98485.37158.8595513.154615.638311.866420.5627.8318813.934212.2955
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016030
(v1.0)
Pdlim556376
MGA0.96735
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016503
(v2.0)
Pdlim556376
543/3270.2182436/3270.298102/3271.8819226/3270.7936115/3270.5444612/3270.3041
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016503
(v2.0)
Pdlim556376
322/1570.5207208/1570.288101/1572.8715215/1571.768652/1570.4533244/1570.0365
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016503
(v2.0)
Pdlim556376
46.724414632
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016503
(v2.0)
Pdlim556376
15.56872464.87
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
5.564376.141189.7925410.806414.5792
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
36.275128.25863.865933.869655.0803
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
5.818064.017236.70016
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
5.6796.079515.81026
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
33.643720.3695
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
5.821443.962216.3725
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
9.0663710.4349.56898
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
51.650541.3759
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
4.475173.36578
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016030
(v1.0)
Pdlim5NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_02255456376
3.855664.08948
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016030
(v1.0)
7942H3056G12-3Mm.24839Enh-pending56376
U024713NAP100998-001Enh;Nrap;TC805631O35884U,F2.67582.54972.52372.62022.45432.40272.4521
0016030
(v1.0)
16147K0334B02-3Mm.24839Enh-pending56376
U024713NAP100998-001Enh;Nrap;TC805631O35884U,F3.05082.8423.01032.75583.1353.01653.0499
0016030
(v1.0)
20508L0605E08-3Mm.24839Enh-pending56376
U024713NAP101727-1TC932062O35884U,F2.70922.52342.4482.40532.82092.62572.718
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016030
(v1.0)
1422861_s_atMm.117709Pdlim5NM_001190852.1,NM_019808.3,NM_001190856.1,NM_001190855.1,NM_001190854.1,NM_019809.3,NM_001190853.1,NM_022554.3,NM_001190857.156376
047.9552.6549.646.675
0016030
(v1.0)
1429783_atMm.117709Pdlim5NM_001190852.1,NM_019808.3,NM_001190856.1,NM_001190855.1,NM_001190854.1,NM_019809.3,NM_001190853.1,NM_022554.3,NM_001190857.156376
0044.075102.22580.85
0016030
(v1.0)
1427475_a_atMm.117709Pdlim5NM_001190852.1,NM_019808.3,NM_001190856.1,NM_001190855.1,NM_001190854.1,NM_019809.3,NM_001190853.1,NM_022554.3,NM_001190857.156376
000146.8486.2
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016030
(v1.0)
A_51_P408881Pdlim5NM_01980856376
11P0.4860.119P
0016030
(v1.0)
A_52_P339246Pdlim5NM_01980956376
11P1.9790.0981P
Proteome N/A