DBTMEE:0016030
| Gene | Pdlim5 |
| Synonyms | Enh
Enh2
Enh3 |
| Description | PDZ and LIM domain 5 |
| Locus | NM_001190855 UCSC: chr3:141902549-142058660(-) OLP: chr3:141902549-142058660(-)
NM_001190854 UCSC: chr3:141902549-142058660(-) OLP: chr3:141902549-142058660(-)
NM_001190852 UCSC: chr3:141902549-142058660(-) OLP: chr3:141902549-142058660(-)
NM_019808 UCSC: chr3:141902549-142058660(-) OLP: chr3:141902549-142058660(-)
NM_001190856 UCSC: chr3:141902549-142058660(-) OLP: chr3:141902549-142058660(-)
NM_001190853 UCSC: chr3:141965044-142058660(-) OLP: chr3:141965044-142058660(-)
NM_022554 UCSC: chr3:141965044-142054814(-) OLP: chr3:141965044-142054814(-)
NM_019809 UCSC: chr3:141965044-142058660(-) OLP: chr3:141965044-142058660(-)
NM_001190857 UCSC: chr3:141965044-142054814(-) OLP: chr3:141965044-142054814(-)
|
| DB links |
Entrez 56376
MGI 1927489
Ensembl ENSMUSG00000028273
|
| Feature | protein-coding |
| GO_BP |
-
 2 Terms
regulation of synapse assembly (GO:0051963)
regulation of dendritic spine morphogenesis (GO:0061001)
|
| GO_MF |
-
7 Terms
|
| GO_CC |
-
11 Terms
|
| KEGG | |
| Ver2_FPKM |
see DBTMEE:2016503 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0016030
(v1.0) | Pdlim5 | NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_022554 | 56376
| 5.56437 | 6.14118 | 9.79254 | 10.8064 | 14.5792 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0016030
(v1.0) | Pdlim5 | NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_022554 | 56376
| 5.81806 | 4.01723 | 6.70016 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0016030
(v1.0) | Pdlim5 | NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_022554 | 56376
| 5.679 | 6.07951 | 5.81026 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0016030
(v1.0) | Pdlim5 | NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_022554 | 56376
| 5.82144 | 3.96221 | 6.3725 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0016030
(v1.0) | Pdlim5 | NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_022554 | 56376
| 9.06637 | 10.434 | 9.56898 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
|---|
0016030
(v1.0) | Pdlim5 | NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_022554 | 56376
| 4.47517 | 3.36578 |
|
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0016030
(v1.0) | Pdlim5 | NM_001190852,NM_001190853,NM_001190854,NM_001190855,NM_001190856,NM_001190857,NM_019808,NM_019809,NM_022554 | 56376
| 3.85566 | 4.08948 |
|
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0016030
(v1.0) | 7942 | H3056G12-3 | Mm.24839 | Enh-pending | 56376
| U024713 | NAP100998-001 | Enh;Nrap; | TC805631 | O35884 | U,F | 2.6758 | 2.5497 | 2.5237 | 2.6202 | 2.4543 | 2.4027 | 2.4521 |
0016030
(v1.0) | 16147 | K0334B02-3 | Mm.24839 | Enh-pending | 56376
| U024713 | NAP100998-001 | Enh;Nrap; | TC805631 | O35884 | U,F | 3.0508 | 2.842 | 3.0103 | 2.7558 | 3.135 | 3.0165 | 3.0499 |
0016030
(v1.0) | 20508 | L0605E08-3 | Mm.24839 | Enh-pending | 56376
| U024713 | NAP101727-1 | | TC932062 | O35884 | U,F | 2.7092 | 2.5234 | 2.448 | 2.4053 | 2.8209 | 2.6257 | 2.718 |
|
| MOE430 |
| DBTMEE | Probe_ID | Unigene | Gene | RefSeq | Entrez | Oo | 1C | 2C | 8C | Blastocyst |
|---|
0016030
(v1.0) | 1422861_s_at | Mm.117709 | Pdlim5 | NM_001190852.1,NM_019808.3,NM_001190856.1,NM_001190855.1,NM_001190854.1,NM_019809.3,NM_001190853.1,NM_022554.3,NM_001190857.1 | 56376
| 0 | 47.95 | 52.65 | 49.6 | 46.675 |
0016030
(v1.0) | 1429783_at | Mm.117709 | Pdlim5 | NM_001190852.1,NM_019808.3,NM_001190856.1,NM_001190855.1,NM_001190854.1,NM_019809.3,NM_001190853.1,NM_022554.3,NM_001190857.1 | 56376
| 0 | 0 | 44.075 | 102.225 | 80.85 |
0016030
(v1.0) | 1427475_a_at | Mm.117709 | Pdlim5 | NM_001190852.1,NM_019808.3,NM_001190856.1,NM_001190855.1,NM_001190854.1,NM_019809.3,NM_001190853.1,NM_022554.3,NM_001190857.1 | 56376
| 0 | 0 | 0 | 146.8 | 486.2 |
|
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0016030
(v1.0) | A_51_P408881 | Pdlim5 | NM_019808 | 56376
| 1 | 1 | P | 0.486 | 0.119 | P |
0016030
(v1.0) | A_52_P339246 | Pdlim5 | NM_019809 | 56376
| 1 | 1 | P | 1.979 | 0.0981 | P |
|
| Proteome |
N/A |
