DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016034
GenePdpk1
SynonymsPdk1
Pkb kinase
Desc.3-phosphoinositide dependent protein kinase 1
LocusNM_001080773 chr17:24210647-24278556(-)
NM_011062 chr17:24210647-24278561(-)
DB links


Entrez 18607
MGI 1338068
Ensembl ENSMUSG00000024122
Vega OTTMUSG00000016280
Featureprotein-coding
GO(BP)
  •   20 Terms
      type B pancreatic cell development (GO:0003323)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      protein phosphorylation (GO:0006468)
      negative regulation of protein kinase activity (GO:0006469)
      hyperosmotic response (GO:0006972)
      signal transduction (GO:0007165)
      regulation of endothelial cell migration (GO:0010594)
      negative regulation of cardiac muscle cell apoptotic process (GO:0010667)
      phosphorylation (GO:0016310)
      peptidyl-threonine phosphorylation (GO:0018107)
      negative regulation of transforming growth factor beta receptor signaling pathway (GO:0030512)
      activation of protein kinase B activity (GO:0032148)
      cellular response to insulin stimulus (GO:0032869)
      negative regulation of toll-like receptor signaling pathway (GO:0034122)
      regulation of apoptotic process (GO:0042981)
      regulation of I-kappaB kinase/NF-kappaB cascade (GO:0043122)
      regulation of mast cell degranulation (GO:0043304)
      focal adhesion assembly (GO:0048041)
      positive regulation of establishment of protein localization to plasma membrane (GO:0090004)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016507
(v2.0)
Pdpk1NM_001080773,NM_001286662,NM_01106218607
11.300749.1769109.73185.373547.2877.4603219.4918113.04442.80488.12943
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016034
(v1.0)
Pdpk118607
Minor ZGA0.99943
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016507
(v2.0)
Pdpk118607
838/4470.3931541/4470.1588622/4474.04142032/4473.508434/447-1.6304309/447-1.1282
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016507
(v2.0)
Pdpk118607
444/1990.6424249/1990.2062546/1994.97441544/1994.269913/199-1.8014133/199-1.1716
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016507
(v2.0)
Pdpk118607
40.19638547.29
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016507
(v2.0)
Pdpk118607
13.80145724.21
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016034
(v1.0)
Pdpk1NM_001080773,NM_01106218607
49.512172.85861.578332.1913.5709
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016034
(v1.0)
Pdpk1FR029549,FR044344,NM_001080773,NM_01106218607
155.834158.895201.182129.07834.846
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016034
(v1.0)
Pdpk1NM_001080773,NM_01106218607
51.76944.1466479.4897
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016034
(v1.0)
Pdpk1NM_001080773,NM_01106218607
50.532172.126580.7864
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016034
(v1.0)
Pdpk1FR029549,FR044344,NM_001080773,NM_01106218607
660.978476.074
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016034
(v1.0)
Pdpk1NM_001080773,NM_01106218607
51.79954.0898488.6038
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016034
(v1.0)
Pdpk1NM_001080773,NM_01106218607
57.011931.080828.4283
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016034
(v1.0)
Pdpk1FR029549,FR044344,NM_001080773,NM_01106218607
210.65133.708
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016034
(v1.0)
Pdpk1NM_001080773,NM_01106218607
20.262431.0731
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016034
(v1.0)
Pdpk1NM_001080773,NM_01106218607
8.0884712.105
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016034
(v1.0)
15754K0237C01-3Mm.10504Pdpk118607
U037516NAP015588-001Pdpk1;TC869726,TC869718,TC869715Q9Z2A0U,F,23.98214.12613.53883.56012.80253.20783.1149
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016034
(v1.0)
1415729_atMm.10504Pdpk1NM_011062.4,NM_001080773.118607
366.375438.675398.625207.275209.675
0016034
(v1.0)
1416501_atMm.10504Pdpk1NM_011062.4,NM_001080773.118607
337.825467.25351.2750177.075
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016034
(v1.0)
A_52_P111390Pdpk1NM_01106218607
11P0.2150.0426P
0016034
(v1.0)
A_52_P111397Pdpk1NM_01106218607
11P0.3950.082P
0016034
(v1.0)
A_52_P619138Pdpk1NM_01106218607
11P0.5940.121P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016034
(v1.0)
Pdpk118607
240240