DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016039
GenePds5b
SynonymsAprin
AS3
Desc.PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
LocusNM_175310 chr5:151476402-151613245(+)
DB links


Entrez 100710
MGI 2140945
Ensembl ENSMUSG00000034021
Vega OTTMUSG00000017116
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016512
(v2.0)
Pds5bNM_175310100710
2.694734.061028.306112.07938.076866.9868124.22375.526748.736556.56323
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016039
(v1.0)
Pds5b100710
2-Cell Transient0.89347
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016512
(v2.0)
Pds5b100710
666/3860.2735470/3860.1674135/3862.0514289/3860.9094103/3860.1503598/3860.0321
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016512
(v2.0)
Pds5b100710
365/1550.7192220/1550.3868130/1553.2496265/1552.087224/155-0.6127164/155-0.5139
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016512
(v2.0)
Pds5b100710
51.934614236.57
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016512
(v2.0)
Pds5b100710
17.520310516.69
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016039
(v1.0)
Pds5bNM_175310100710
4.219615.75378.989225.6070917.0305
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016039
(v1.0)
Pds5bFR287087,NM_175310100710
83.980577.4494188.77109.836185.186
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016039
(v1.0)
Pds5bNM_175310100710
4.411990.9854896.27741
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016039
(v1.0)
Pds5bNM_175310100710
4.306545.695934.0863
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016039
(v1.0)
Pds5bFR287087,NM_175310100710
158.84197.1994
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016039
(v1.0)
Pds5bNM_175310100710
4.414550.9719914.48171
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016039
(v1.0)
Pds5bNM_175310100710
8.322625.413876.04281
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016039
(v1.0)
Pds5bFR287087,NM_175310100710
105.621145.907
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016039
(v1.0)
Pds5bNM_175310100710
4.8408113.7281
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016039
(v1.0)
Pds5bNM_175310100710
1.753221.45955
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016039
(v1.0)
1835C0261B08-3Mm.22645AI646570100710
U006494NAP101002-001TC935929,TC9359283.48553.47113.38473.41893.28413.25533.3542
0016039
(v1.0)
4328C0928G12-3Mm.22645AI646570100710
U006494NAP101002-001TC9359292.08342.38242.35932.15532.06622.20182.3066
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016039
(v1.0)
1435242_atMm.32959Pds5bNM_175310.6100710
332.9419.075779.125378.4456.325
0016039
(v1.0)
1436161_atMm.32959Pds5bNM_175310.6100710
000265.6406.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016039
(v1.0)
A_51_P223946AprinAK122414100710
11P1.0030.987P
Proteome N/A